Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq15031 228 9e-55 seq37735 179 4e-40 >seq15031 Length=1318 Score = 228 bits (252), Expect = 9e-55 Identities = 288/396 (73%), Gaps = 0/396 (0%) Strand=Plus/Plus Query 159944 CGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTT 160003 ||||| || || |||| || || | || || ||||| || || |||||||| || || Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 160004 CCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGAC 160063 || |||| || || ||| | || || ||||| || |||||||| ||||| | || Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGAT 1042 Query 160064 GAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATC 160123 || ||| | || || || ||||||| |||| | || | |||||| | | || | Sbjct 1043 GAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1102 Query 160124 TATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATC 160183 | |||||||||||||||||||||||| || ||||| ||||||||||| ||||| Sbjct 1103 GCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATT 1162 Query 160184 TGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTC 160243 ||||||||| || ||||| || || || || ||||||| ||| | |||| || | Sbjct 1163 GCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCCTATT 1222 Query 160244 GGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 160303 |||||||| || || |||| ||||||||| || || ||||||||||| || | |||| Sbjct 1223 GGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATG 1282 Query 160304 CTTGTATTCCAAGCAGAACACAATATCCTTATGCAT 160339 ||||||| || || || || ||||| ||||||||| Sbjct 1283 ATTGTATTTCAGGCTGAGCATAATATTCTTATGCAT 1318 >seq37735 Length=758 Score = 179 bits (198), Expect = 4e-40 Identities = 264/363 (73%), Gaps = 8/363 (2%) Strand=Plus/Minus Query 161608 GGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCTAGT 161667 || |||||| | || || || || || | || |||||||| |||||| | || ||| Sbjct 360 GGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGT 301 Query 161668 TCCTATCTTGAGGG-TGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGAC-GCTA 161725 || ||| | || || ||||| || | | || || ||||| |||||| ||| | ||| Sbjct 300 TCTTATTTGGAAGGATGCAACTTCT-TAACCGCAGCAGTCTCCACTCCTGCTAATAGCT- 243 Query 161726 TGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGG 161784 | | || ||| || || || || ||||||||||| || || || ||||| | | ||| Sbjct 242 TAGCACACTCT-TTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGG 184 Query 161785 ATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGA 161844 ||| | || || || |||| |||||| || |||||||| ||||||| | || || Sbjct 183 TGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGT 124 Query 161845 TTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTAT 161903 |||||| | ||||| |||||||||||||| ||| || | | || ||||| ||||| || Sbjct 123 TTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGCAAT 65 Query 161904 TGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACA 161963 ||| ||||| ||||| |||||||||||||| || || || || ||||| ||||| || Sbjct 64 TGCATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCA 5 Query 161964 GTC 161966 ||| Sbjct 4 GTC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550981014910200