Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq15031 178 2e-39 seq37735 163 4e-35 >seq15031 Length=1318 Score = 178 bits (196), Expect = 2e-39 Identities = 282/399 (71%), Gaps = 8/399 (2%) Strand=Plus/Plus Query 188992 CGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTC 189051 || || || || |||| || || | ||||||||||| || || |||||||| || | Sbjct 923 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATT 982 Query 189052 CCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGAT 189111 ||| | || || || ||| | || || || || || |||||||| || || | ||| Sbjct 983 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGCGGCATCCGTTGAT 1042 Query 189112 GAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATC 189171 || ||| | ||||| || ||||||| |||| | || | |||||| | | || | Sbjct 1043 GAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG--TG 1100 Query 189172 TACGC---CTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGG 189228 || || ||| |||||||||||||||||||| || ||||| ||||||||||||||| Sbjct 1101 TA-GCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGG 1159 Query 189229 ATCTGC-ATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCC 189287 || ||| |||| || || || ||||||||||| || | || || || || ||||||| Sbjct 1160 AT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCGGCGACTGCTGTTTTCTTGATCTATCC 1218 Query 189288 TTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTA 189347 | ||||||| || || || || | ||||| | || || ||| || ||||| | Sbjct 1219 TATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTT 1278 Query 189348 CATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCA 189386 ||| |||| || || || ||||| || || || ||||| Sbjct 1279 TATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCA 1317 >seq37735 Length=758 Score = 163 bits (180), Expect = 4e-35 Identities = 267/377 (71%), Gaps = 6/377 (2%) Strand=Plus/Minus Query 190065 GCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGCTACAAGCTGGTACACC 190124 || ||| |||| | || || ||| | || || || || |||| || ||||| || Sbjct 375 GCCTATTTCGCCTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACT 316 Query 190125 CACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAATTTTCTTACAGCGGCTGTGTCAAC 190183 || ||| | |||||| ||| | || || ||| | || | | || || || || || || Sbjct 315 CATGGATTGGCAAGTTCTTATTTGGAAGGATGCAACTTCT-TAACCGCAGCAGTCTCCAC 257 Query 190184 GCCTGCTGAT-GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAAGGCG 190242 |||||| || ||| | | || ||| | | |||| |||||||||||| | || || | Sbjct 256 TCCTGCTAATAGCT-TAGCACACTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAG 198 Query 190243 ATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTT 190302 |||| | | ||| ||| | || || || ||| ||||||| || |||||||| |||| Sbjct 197 ATTTTACCCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTT 138 Query 190303 TCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGT 190361 ||| |||| || |||||| | ||||| |||||||| || || ||| || | | || Sbjct 137 TCGGATTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGG 79 Query 190362 CCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATC 190421 ||||| ||||| ||||| ||||| ||||| || |||||||||||| || || || || Sbjct 78 CCTTATAATGCAATTGCATTCTCAGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATT 19 Query 190422 TACCCTCTGGGTCAATC 190438 || || |||||||| || Sbjct 18 TATCCACTGGGTCAGTC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633625768866000