Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq6726 307 2e-81 seq13760 208 1e-51 seq14249 107 4e-21 >seq6726 Length=48881 Score = 307 bits (340), Expect = 2e-81 Identities = 237/280 (85%), Gaps = 1/280 (0%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| ||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 26230 ATGCACTTTACTGGGTGTTGGAGGGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 26289 Query 99 CAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 |||||||||| | ||| ||||||||||||||||||||||| ||||||||||| | |||| Sbjct 26290 CAAAGCAGGCTTATGCCTGAATACATTAGCATGGAATAATAAAATAGGACGTGTGATTCT 26349 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||||||||||||||||||| |||||||||| ||||||| ||| ||||| | |||| Sbjct 26350 ATTTTGTTGGTTTCTAGGATTACCGTAATGATGAATAGGGTCAGTTGGGGGCATTTGTAT 26409 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 | || ||||||||||||||||||||||| || ||||| ||||||||||||||| | Sbjct 26410 TACATCGTCAGAGGTGAAATTCTTGGATTGATGTAAGACAAACTACTGCGAAAGCATCTG 26469 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||| |||||| |||| ||||||| |||| ||| Sbjct 26470 CCAAGGATGACTTCATTGATCA-AGAACGAAGGTTAAGGG 26508 >seq13760 Length=17024 Score = 208 bits (230), Expect = 1e-51 Identities = 188/235 (80%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| ||| |||| |||||| |||||||||||||| ||||||||||| Sbjct 32 ATGCACTTTACTGTGTGGTGGAGGGAACCAGGAATTTTACTTTGAAAATATTAGAGTGTT 91 Query 99 CAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 |||||||||| | ||| ||||| ||| |||||||| |||| | |||||| || | |||| Sbjct 92 CAAAGCAGGCTTATGCCTGAATAAATTGGCATGGAACAATAAATTAGGACATGTGATTCT 151 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||||| ||||||||||||| || | ||||| ||||||| ||| ||||| | |||| Sbjct 152 ATTTTATTGGTTTCTAGGATTACCATGATGATGAATAGGGTCAGTTGGGGGCATTTGTAT 211 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 | |||||||||||| |||| ||||||| ||| ||||| ||||||| | ||||| Sbjct 212 AC-ATTGTCAGAGGTACAATTATTGGATTAATTTAAGACAAACTACTCCAAAAGC 265 >seq14249 Length=6542 Score = 107 bits (118), Expect = 4e-21 Identities = 105/134 (78%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 181 CCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTC 240 |||||||||| ||||||| ||| ||||| | ||||| || ||||||||||||| | Sbjct 3 CCGTAATGATGAATAGGGTCAGTTGGGGGCATTTGTATTACATCGTCAGAGGTGAAACCC 62 Query 241 TTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||||| || ||||| ||||||||| ||||| | ||||||||| |||||| |||| Sbjct 63 TTGGATTGATGTAAGACAAACTACTGCAAAAGCATCTGCCAAGGATGACTTCATTGATCA 122 Query 301 GTGAACGAAAGTTA 314 |||| || |||| Sbjct 123 -AGAACAAAGGTTA 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915056176320