Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq6726 316 8e-84 >seq6726 Length=48881 Score = 316 bits (350), Expect = 8e-84 Identities = 256/308 (83%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 |||||| ||| ||||| | | ||| | ||||||||| |||||||||||||||||||||| Sbjct 17426 AGGATGTTGGTGTAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC 17485 Query 440 ATCTATGCGAGTGTTTGGGTG--TCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGG 497 || ||||||| |||||||| | |||||| | ||||||||||||| || | | ||| Sbjct 17486 ATGCCTGCGAGTATTTGGGTGCTTGAAACCCTTATGCGTAATGAAAGTAAATGTAAATGG 17545 Query 498 GAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG--GATGGATTTGAGTAAG 555 || | | | ||||||||| |||| ||| ||| || ||||| |||||||| Sbjct 17546 GATCTGTTAAAAGTGCACCATTGACCAGTCCAGATTATTTATATGATGGTACTGAGTAAG 17605 Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17606 AGCAAGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 17665 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 17666 AAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTAT 17725 Query 676 AGGGGCGA 683 |||||||| Sbjct 17726 AGGGGCGA 17733 Score = 188 bits (208), Expect = 3e-45 Identities = 148/176 (84%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||||||||||||||||||| || |||| |||||||| | ||||| ||||||| Sbjct 17053 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAAT 17112 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || ||||||||||||| ||||||| |||| ||||||||||||| ||||||||| Sbjct 17113 ATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAA 17172 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTG 215 |||||||| || || |||||||||||| |||||||| | ||| | ||||||| Sbjct 17173 AGAGAGTT-AACAGTGCGTGAAATTGTTAAAAGGGAAACAATTGAAGTTAGACTTG 17227 Score = 118 bits (130), Expect = 4e-24 Identities = 88/104 (85%), Gaps = 8/104 (8%) Strand=Plus/Plus Query 586 AACTATGCCTGAATAGGGTGAA--------GCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 ||| |||||||||||||||||| ||||||||||| ||||||||| ||| | || Sbjct 43252 AACAATGCCTGAATAGGGTGAAGCCATGAAGCCAGAGGAAAATCTGGTGGAAGCTTGTAG 43311 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||||| |||||||||||||| ||||| |||||||||||||| Sbjct 43312 CGGTTCTGACGTGCAAATCGATCATCAAACTTGGGTATAGGGGC 43355 Score = 75.2 bits (82), Expect = 5e-11 Identities = 85/113 (75%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG--TCAAA 465 || |||||| ||||| ||||||||||||| |||| ||| ||| |||||||| | ||| Sbjct 48257 CCTGTCTTGAAACACAGACCAAGGAGTCTCACATGCCTGCAAGTATTTGGGTGCTTGAAA 48316 Query 466 CCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCAT 518 ||| | || |||||||||| || | | ||||| | | | ||||||||| Sbjct 48317 CCCTTATGCATAATGAAAGTAAATGTAAATGGGATCTGTTAAAAGTGCACCAT 48369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079662913250