Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq6726 331 1e-88 seq13760 145 1e-32 >seq6726 Length=48881 Score = 331 bits (366), Expect = 1e-88 Identities = 228/258 (88%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27009 TACTCGCTGGCTTGGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 26950 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||| ||||||||| || | | ||||||||||||||||| |||| Sbjct 26949 ACCTGTTATTGCCTCCAACTTCCATCAACTAAACGTTGATAGTCCCTCTAAGAAGTCAGC 26890 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| || ||| | || |||||||||||| ||||||||||||||||||||||||| Sbjct 26889 AGCCAGCCGTAGCCAGCTGGACTATTTAGCAGGAGAAGGTCTCGTTCGTTATCGGAATTA 26830 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 ||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| Sbjct 26829 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAACCACAAAATCAAGA 26770 Query 241 AAGAGCTATCAATCTGTC 258 || ||||||||||||||| Sbjct 26769 AAAAGCTATCAATCTGTC 26752 >seq13760 Length=17024 Score = 145 bits (160), Expect = 1e-32 Identities = 112/133 (84%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 ||||||| | || |||||| ||||| ||||||| ||| ||||| |||||||||||| Sbjct 5438 ACCATAGCCAGCTGGACTATTTGGCAGGAGAAGGTCTTGTTTGTTATTGGAATTAACCAG 5379 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 | ||||||||||| |||||||||| ||||||||||||||| ||| | |||||| ||| || Sbjct 5378 AAAAATCACTCCAACAACTAAGAATGGCCATGCACCACCAACCAAAAAATCAAAAAAAAG 5319 Query 246 CTATCAATCTGTC 258 ||| ||||||||| Sbjct 5318 CTACCAATCTGTC 5306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796678695915