Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq6726 444 1e-122 seq3424 298 9e-79 >seq6726 Length=48881 Score = 444 bits (492), Expect = 1e-122 Identities = 257/264 (97%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 19821 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 19762 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19761 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 19702 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19701 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 19642 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 ||||||||||||||||||||||||||| | ||||| | |||||||||||||||||||| Sbjct 19641 TGTGGTAACTTTTCTGGCACCTCTAGCTTTAAATTCTAAAGGACTAAAGGATCGATAGGC 19582 Query 272 CACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||||||||||| Sbjct 19581 CACACTTTCATGGTTTGTATTCAC 19558 >seq3424 Length=576 Score = 298 bits (330), Expect = 9e-79 Identities = 196/215 (91%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||||||||||||||| |||| ||| ||||||| |||||||||||| ||||| || Sbjct 223 CATCAGTAGGGTAAAACTAAACTGTATCACAACGGTCTCAACCCAGCTCACATTCCC-AT 165 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||| |||||||||||||| |||||| |||||||||| |||||| ||||||||||| || Sbjct 164 TAGTGAGTGAACAATCCAACACTTACCAAATTCTGCTTTGGTATGTTAGGAAGAGCCAAC 105 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| Sbjct 104 ATCAAAGGATCAAAAAGAAATGTCGCTATGAATGCTTGGCTGCCACAAGCCAGTTATCCC 45 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATT 246 ||||||||||||||||||||||||||| | ||||| Sbjct 44 TGTGGTAACTTTTCTGGCACCTCTAGCTTTAAATT 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854265731040