Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq6726 178 2e-42 seq13760 138 1e-30 >seq6726 Length=48881 Score = 178 bits (196), Expect = 2e-42 Identities = 158/194 (81%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| Sbjct 26366 CTAGAAACCAACAAAATAGAATCACACGTCCTATTTTATTATTCCATGCTAATGTATTCA 26307 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| | | Sbjct 26306 GGCATAAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCTCCAA 26247 Query 126 CA-CCAATGAAG-GCATACGGGCTCACCAAGAGGTAGGGCT-GGGTAATGCAGTACTCGC 182 || ||| | ||| |||| | ||||||||||||| | || || |||||| | | Sbjct 26246 CACCCAGTAAAGTGCATTGAAGTTCACCAAGAGGTAAGCCTCCAACAAATCAGTACACAC 26187 Query 183 CGTGAGGCGGACCA 196 | |||||||||| Sbjct 26186 CAAAAGGCGGACCA 26173 >seq13760 Length=17024 Score = 138 bits (152), Expect = 1e-30 Identities = 128/157 (82%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||| ||||||| | || |||||| | |||| |||||||| ||| ||||| Sbjct 168 CTAGAAACCAATAAAATAGAATCACATGTCCTAATTTATTGTTCCATGCCAATTTATTCA 109 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTT-CCTCC-G 123 ||| |||||||||||||||||||||||| || |||| |||||| |||||||| ||||| Sbjct 108 GGCATAAGCCTGCTTTGAACACTCTAATATTTTCAAAGTAAAATTCCTGGTTCCCTCCAC 49 Query 124 CACACCAATGAAG-GCATACGGGCTCACCAAGAGGTA 159 |||| || | ||| |||| | ||||||||||||| Sbjct 48 CACA-CAGTAAAGTGCATTGAAGTTCACCAAGAGGTA 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595109387310