Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq6726 361 1e-97 seq11496 136 7e-30 >seq6726 Length=48881 Score = 361 bits (400), Expect = 1e-97 Identities = 267/310 (86%), Gaps = 1/310 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||| |||||||||||| | || ||| ||| || || | |||||||| Sbjct 26843 GAACGAGACCTTCTCCTGCTAAATAGTCCAGCTGGCTACGGCTGGCTGCTGACTTCTTAG 26902 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 |||||||||| | | || |||||||||| |||||||||||||||||||||||||||| Sbjct 26903 AGGGACTATCAACGTTTAGTTGATGGAAGTTGGAGGCAATAACAGGTCTGTGATGCCCTT 26962 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| | Sbjct 26963 AGATGTTCTGGGCCGCACGCGCGCTACACTGACCAAGCCAGCGAGTATATCACCTTATCT 27022 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | || | ||||||||||||| ||||| |||||| |||||||||||||||||||||||| Sbjct 27023 GAAAAGATTGGGTAATCTTGTGAAACTTGGTCGTGATGGGGATAGAGCATTGCAATTATT 27082 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 27083 GCTCTTCAACGAGGAATACCTAGTAAGCGTATGTCATCAGCATGCGTTGATTACGTCCCT 27142 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 27143 GCCCTTTGTA 27152 Score = 93.3 bits (102), Expect = 8e-17 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| || Sbjct 5958 CTCTTCAACGAGGAATACCTAGTAAGCGTATGTCATCAGCATGCGTTGATTACGTCATTG 6017 Query 320 CCCTTTGTA 328 | ||||||| Sbjct 6018 CACTTTGTA 6026 >seq11496 Length=34879 Score = 136 bits (150), Expect = 7e-30 Identities = 87/94 (93%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 |||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| Sbjct 9105 TGGGGATAGAGCATTGCAATTATT---CTTCAACGAGGAATACCTAGTAAGCGTATGTCA 9161 Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||| ||||||||||||||||||||||||||| Sbjct 9162 TCAGCATGCGTTGATTACGTCCCTGCCCTTTGTA 9195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947051147520