Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq6726 755 0.0 seq4817 464 2e-128 >seq6726 Length=48881 Score = 755 bits (836), Expect = 0.0 Identities = 492/538 (91%), Gaps = 5/538 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 19526 CTTTTGTTCTACTTGAGATTTCTGTTCTCAATGAGTCCCCCTTAGGACACCTGCGTTATT 19467 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 19466 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCAGATC 19407 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||| ||||||||||| || | ||| ||| || || |||| || |||||||||| Sbjct 19406 AGCCCAAAAAGGACCTTAATGCTAAAAAGTGGGATGTTAATCCCAGCTCTGCTTCATTGA 19347 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 |||||||||| ||||||| ||||||||||||||||| |||| | ||||||||||| Sbjct 19346 ATAAGTAAAAAGACGATAAAGGTAGTGGTATTTCACTGGCGCTTAC---GCTCCCACTTA 19290 Query 247 TTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||||||||| ||| | ||| |||||||| ||| |||||||||||||||||||||||||| Sbjct 19289 TTCTACACC-CTCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 19231 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 19230 CTTTCCCCGCTGATTTTGCCAAGCCCATTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 19171 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19170 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 19111 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19110 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 19051 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 19050 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACACCACTTTCTG 18993 >seq4817 Length=502 Score = 464 bits (514), Expect = 2e-128 Identities = 353/413 (85%), Gaps = 8/413 (2%) Strand=Plus/Minus Query 135 AAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaa 194 ||||||||||| || | ||| ||| || || |||| || |||||||||| |||||| Sbjct 500 AAGGACCTTAATGCTAAAAAGTGGGATGTTAATCCCAGCTCTGCTTCATTGAACAAGTAA 441 Query 195 aaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACAC 254 ||| || |||| ||||||||||||||||| || | | || |||||||||||||||| Sbjct 440 AAAGACAATAAAGGTAGTGGTATTTCACTGGCACTTAT---GCCCCCACTTATTCTACAC 384 Query 255 CTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 313 | ||| | ||| |||||||| | | |||||||||||||||||||||||||||||||||| Sbjct 383 C-CTCTATGTCTTTTCACAATGCCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 325 Query 314 GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 ||||||| | || ||| |||||||||||||||||| | |||||||||||||||||| Sbjct 324 GCTGATTGTTCAAACCCCATTCCCTTGGCTGTGGTTTTTATGGATAGTAGATAGGGACAG 265 Query 374 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 || ||| || || ||| |||||||||| ||||||||||||||||| |||||||||||||| Sbjct 264 TGAGAAGCTTGTGAATACATTCATGCGTGTCACTAATTAGATGACAAGGCATTTGGCTAC 205 Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||| |||||||||||||||||| | ||||||| ||||||||||||||||||||||||| Sbjct 204 CTTAATAGAGTCATAGTTACTCCCACGGTTTACCTGCGCTTGGTTGAATTTCTTCACTTT 145 Query 494 GACATTCAGAGCACTG---GGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||||||||||||||| |||||||||||||||| ||||||| ||||||||| Sbjct 144 GACATTCAGAGCACTGGCCGGCAGAAATCACATTGTGTCAACACCACTTTCTG 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634943028320