Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20sorghi_20[genbank_20GCA_5F001263375.1_202015-08-07] 15,715 sequences; 99,534,058 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq6726 690 0.0 seq14545 331 3e-88 seq702 313 8e-83 seq9900 237 5e-60 >seq6726 Length=48881 Score = 690 bits (764), Expect = 0.0 Identities = 458/506 (91%), Gaps = 3/506 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||| |||||||||||||||| | || |||||||||||||||||| Sbjct 26038 GTACTCATTCCAATTGTAAGACCCAAAAGAGCCATACATTGTTATTTATTGTCACTACCT 25979 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||| |||||||||||||||||||||||||||| ||||| ||| || |||||| Sbjct 25978 CCCCGTGTTGGGATTGGGTAATTTGCGCGCCTGCTGCAATCCTTAGATTTGAGGGCCGTT 25919 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||| | ||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 25918 TCTCAGGCCCTCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTCATCACCATGGTA 25859 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| Sbjct 25858 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCACCGGCA 25799 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| |||||||||||| ||||||||||| ||| |||| | ||||| Sbjct 25798 CAAGGCCATGCGATTCGAGAAGTTATTATGAGTCACCAAGGAGACCCAAAGGCCATTGGT 25739 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAG--TCGGGGTTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||||||||||| || | ||| |||| |||||||||||||||| Sbjct 25738 TTTTTATCTAATAAATACACCCCTTCCATAGGTTGGGGCTTTTCAGCATGTATTAGCTCT 25679 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 25678 AGAATTACCACAGTTATCCATGTAGTAAGGTATCATCAAATAAACTATAACTGATTTAAT 25619 Query 419 GAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 25618 GAGCCATTCGCAGTTTCACTGTATAG-TTGTTTATACTTAGACATGCATGGCTTAATCTT 25560 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||| Sbjct 25559 TGAGACAAGCATATGACTACTGGCAG 25534 >seq14545 Length=956 Score = 331 bits (366), Expect = 3e-88 Identities = 212/229 (93%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 278 AAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAG--TCGG 335 |||||| ||| ||| | |||||||||||||||||||||||||||||||| ||| | || Sbjct 460 AAGGAGACCCAAAGTCCATTGGTTTTTTATCTAATAAATACACCCCTTCCAAAGGTTGGG 401 Query 336 GGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATC 395 | |||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 400 GCTTTTCAGCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGTAAGGTATCATC 341 Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATAC 455 |||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 340 AAATAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG-TTGTTTATAC 282 Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 281 TTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 233 >seq702 Length=764 Score = 313 bits (346), Expect = 8e-83 Identities = 242/287 (84%), Gaps = 2/287 (1%) Strand=Plus/Minus Query 70 GGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT 129 ||||||||||||||||||| |||||||| ||||| || || |||||||||||||| Sbjct 764 GGGATTGGGTAATTTGCGCTCCTGCTGCAATCCTTATATTTGAGGGCCGTTTCTCAGGCC 705 Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT 189 | |||||||||||| |||||| |||||| ||||||||| ||||||||||||| |||| Sbjct 704 CTCTCTCCGGAATCAAACCCTTATTCCCTGTTACCCGTCATCACCATGGTAGGCCTCTAT 645 Query 190 CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCAT 249 ||||||||| ||||||||||||||||| ||||||||||| |||| | ||| ||||||||| Sbjct 644 CCTACCATCAAAAGTTGATAGGGCAGATATTTGAATGAAGCATCACTGGCGCAAGGCCAT 585 Query 250 GCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCT 309 | |||| | |||||||||||| ||||||||||| ||| |||| | ||||||| | |||| Sbjct 584 GTGATTTGAGAAGTTATTATGAGTCACCAAGGAGACCCAAAGGCCATTGGTTTCTCATCT 525 Query 310 AATAAATACACCCCTTCCGAAG--TCGGGGTTTTTAGCATGTATTAG 354 ||| ||||||||| |||| ||| | ||| |||| | |||||||||| Sbjct 524 AATGAATACACCCTTTCCAAAGGTTGGGGCTTTTCATCATGTATTAG 478 >seq9900 Length=59050 Score = 237 bits (262), Expect = 5e-60 Identities = 166/187 (89%), Gaps = 3/187 (2%) Strand=Plus/Minus Query 320 CCCCTTCCGAAG--TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCC 377 || ||||| ||| | ||| |||| ||||| ||||||| |||||||||| || ||||||| Sbjct 7621 CCTCTTCCAAAGGTTGGGGATTTTCAGCATTTATTAGCCCTAGAATTACAACAGTTATCC 7562 Query 378 ATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437 ||||||||||||| ||||||||||| ||||||||||||||||| |||| | |||||||| Sbjct 7561 ATGTAGTAAGGTATCATCAAATAAACTATAACTGATTTAATGAGTCATTTGAAGTTTCAC 7502 Query 438 TGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTA 497 ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 7501 TGTATAG-TTGTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGAATA 7443 Query 498 CTGGCAG 504 |||||| Sbjct 7442 ATGGCAG 7436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510162640640