Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01]
22,208 sequences; 65,184,451 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq18584 717 0.0
seq20366 197 6e-48
seq20114 194 7e-47
>seq18584
Length=716
Score = 717 bits (794), Expect = 0.0
Identities = 526/603 (87%), Gaps = 9/603 (1%)
Strand=Plus/Plus
Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87
||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
Sbjct 121 AGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCAT 180
Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 240
Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 241 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGGGATTGCAAC 300
Query 208 CAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGT-CAGG 266
||||||||| ||| || | || |||| | | ||||| |||| | ||| | ||||
Sbjct 301 CAGACTTGCTCGCGGT-GTTCCGCCGGTCTTCTGACCGGTCTACTCGCC-GCGTTGCAGG 358
Query 267 CCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTG 326
|||||||| || | || | |||||| | | ||||||| || |||| ||| |||
Sbjct 359 CCAGCATCGTCTGGTGCCGCTGGATAA-GACTTGAGGAATGTAGCTCCCTC--GGGAGTG 415
Query 327 TTATAGCCCGGGGTGGAATGCGGCCCGC-CTGGACTGAGGTCCGCGCTCCGGCTAGGATG 385
|||||||| ||| |||| || || | ||||||||| ||||||| |||||||||||
Sbjct 416 TTATAGCCTCTTGTG--ATGCAGCGAGCGCCGGACTGAGGACCGCGCTTCGGCTAGGATG 473
Query 386 CTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTAT 445
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 474 CTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTAT 533
Query 446 GCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGT 505
|||||||||||||||| |||||| | |||| |||||||||||||| ||||| |||||| |
Sbjct 534 GCGAGTGTTTGGGTGTTAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAGAACCCAT 593
Query 506 GAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTG 565
|||| ||| ||||||||||||| ||||||||||||||| |||||||||||| ||
Sbjct 594 AAGGGGGCATCATCGACCGATCCGGATGTCTTCGGATGGTACTGAGTAAGAGCAAGTATG 653
Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 713
Query 626 GGA 628
|||
Sbjct 714 GGA 716
>seq20366
Length=206
Score = 197 bits (218), Expect = 6e-48
Identities = 150/176 (85%), Gaps = 1/176 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||||||||||||||||||||||||| || |||| |||||||| | ||||| |||||||
Sbjct 28 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAAT 87
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
|| || ||||||||||||| ||||||| |||| ||||||||||||| |||||||||
Sbjct 88 ATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAA 147
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTG 215
|||||||| || || ||||||||||||| |||||||| | |||| | |||||||
Sbjct 148 AGAGAGTT-AACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTG 202
>seq20114
Length=223
Score = 194 bits (214), Expect = 7e-47
Identities = 112/115 (97%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 163
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 162 AGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079523638400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |