Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq18584 717 0.0 seq20366 197 6e-48 seq20114 194 7e-47 >seq18584 Length=716 Score = 717 bits (794), Expect = 0.0 Identities = 526/603 (87%), Gaps = 9/603 (1%) Strand=Plus/Plus Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87 ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| | Sbjct 121 AGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCAT 180 Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 240 Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 241 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGGGATTGCAAC 300 Query 208 CAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGT-CAGG 266 ||||||||| ||| || | || |||| | | ||||| |||| | ||| | |||| Sbjct 301 CAGACTTGCTCGCGGT-GTTCCGCCGGTCTTCTGACCGGTCTACTCGCC-GCGTTGCAGG 358 Query 267 CCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTG 326 |||||||| || | || | |||||| | | ||||||| || |||| ||| ||| Sbjct 359 CCAGCATCGTCTGGTGCCGCTGGATAA-GACTTGAGGAATGTAGCTCCCTC--GGGAGTG 415 Query 327 TTATAGCCCGGGGTGGAATGCGGCCCGC-CTGGACTGAGGTCCGCGCTCCGGCTAGGATG 385 |||||||| ||| |||| || || | ||||||||| ||||||| ||||||||||| Sbjct 416 TTATAGCCTCTTGTG--ATGCAGCGAGCGCCGGACTGAGGACCGCGCTTCGGCTAGGATG 473 Query 386 CTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTAT 445 ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 474 CTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTAT 533 Query 446 GCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGT 505 |||||||||||||||| |||||| | |||| |||||||||||||| ||||| |||||| | Sbjct 534 GCGAGTGTTTGGGTGTTAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAGAACCCAT 593 Query 506 GAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTG 565 |||| ||| ||||||||||||| ||||||||||||||| |||||||||||| || Sbjct 594 AAGGGGGCATCATCGACCGATCCGGATGTCTTCGGATGGTACTGAGTAAGAGCAAGTATG 653 Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 713 Query 626 GGA 628 ||| Sbjct 714 GGA 716 >seq20366 Length=206 Score = 197 bits (218), Expect = 6e-48 Identities = 150/176 (85%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||||||||||||||||||| || |||| |||||||| | ||||| ||||||| Sbjct 28 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAAT 87 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || ||||||||||||| ||||||| |||| ||||||||||||| ||||||||| Sbjct 88 ATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAA 147 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTG 215 |||||||| || || ||||||||||||| |||||||| | |||| | ||||||| Sbjct 148 AGAGAGTT-AACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTG 202 >seq20114 Length=223 Score = 194 bits (214), Expect = 7e-47 Identities = 112/115 (97%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 222 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 163 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 162 AGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079523638400