Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq9847 221 2e-55 seq7656 212 1e-52 seq18585 206 5e-51 seq18586 199 7e-49 seq5195 192 1e-46 seq20020 156 7e-36 >seq9847 Length=14430 Score = 221 bits (244), Expect = 2e-55 Identities = 205/264 (78%), Gaps = 21/264 (8%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||| | ||| ||||||| || ||||||||||| ||||| ||||| || Sbjct 4086 CATCAGTAGGGTAAACCCAACTTGTCTCACAACAGTCTAAACCCACCTCACTTTCCCCAT 4145 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 | ||||||||||||||| | || || |||||||||| || |||||| |||||| ||| Sbjct 4146 TGGTGGGTGAACAATCCTGCACTGGCCAAATTCTGCTTTGGCATGATAAGAAGAGTTGAC 4205 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || |||| | |||||||||| || |||||||| |||||||||||||||||||||||||| Sbjct 4206 ATTGAAGCACCAAAAAGCAATGTTGCTATGAATGCTTGGCTGCCACAAGCCAGTTATCCA 4265 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 | |||||| |||||| | |||| ||||| | |||||| Sbjct 4266 T--------------------TCTAGCTCTAAATTTTAAAAGACT-AAGGACCAATAGGC 4304 Query 272 CACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||| ||||||| Sbjct 4305 CACACTTTCATGGTTTTTATTCAC 4328 >seq7656 Length=643 Score = 212 bits (234), Expect = 1e-52 Identities = 117/117 (100%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 548 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 489 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 205 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 488 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 432 >seq18585 Length=534 Score = 206 bits (228), Expect = 5e-51 Identities = 119/122 (98%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 122 TACTAAGCGGAATTACCATTGCGACGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 63 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 3 Query 121 AT 122 || Sbjct 2 AT 1 >seq18586 Length=582 Score = 199 bits (220), Expect = 7e-49 Identities = 119/125 (95%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 582 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 523 Query 231 CCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTA 290 |||||||| | ||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 522 CCTCTAGCTTTAAATTCTAAAGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTA 463 Query 291 TTCAC 295 ||||| Sbjct 462 TTCAC 458 >seq5195 Length=16122 Score = 192 bits (212), Expect = 1e-46 Identities = 133/151 (88%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 ||||||| ||||| || ||||||||||||| || |||||| | |||| ||||||| |||| Sbjct 3275 AAGAGCCAACATCAAAAGATCAAAAAGCAATGTTGCTATGGATGCTTTGCTGCCAAAAGC 3216 Query 202 CAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGG 261 ||||||||||||| ||||||||||||||||||||||| | ||||| | |||||||||| Sbjct 3215 CAGTTATCCCTGTAGTAACTTTTCTGGCACCTCTAGCTTTAAATTCTAAAGGACTAAAGG 3156 Query 262 ATCGATAGGCCACACTTTCATGGTTTGTATT 292 || ||||||||||||||||||||||| |||| Sbjct 3155 ATTGATAGGCCACACTTTCATGGTTTATATT 3125 >seq20020 Length=285 Score = 156 bits (172), Expect = 7e-36 Identities = 88/89 (99%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 197 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 256 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||| Sbjct 257 TAGTGGGTGAACAATCCAACGCTTACCGA 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854210254848