Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01]
22,208 sequences; 65,184,451 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq9847 221 2e-55
seq7656 212 1e-52
seq18585 206 5e-51
seq18586 199 7e-49
seq5195 192 1e-46
seq20020 156 7e-36
>seq9847
Length=14430
Score = 221 bits (244), Expect = 2e-55
Identities = 205/264 (78%), Gaps = 21/264 (8%)
Strand=Plus/Plus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91
||||||||||||||| | ||| ||||||| || ||||||||||| ||||| ||||| ||
Sbjct 4086 CATCAGTAGGGTAAACCCAACTTGTCTCACAACAGTCTAAACCCACCTCACTTTCCCCAT 4145
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
| ||||||||||||||| | || || |||||||||| || |||||| |||||| |||
Sbjct 4146 TGGTGGGTGAACAATCCTGCACTGGCCAAATTCTGCTTTGGCATGATAAGAAGAGTTGAC 4205
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
|| |||| | |||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 4206 ATTGAAGCACCAAAAAGCAATGTTGCTATGAATGCTTGGCTGCCACAAGCCAGTTATCCA 4265
Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271
| |||||| |||||| | |||| ||||| | ||||||
Sbjct 4266 T--------------------TCTAGCTCTAAATTTTAAAAGACT-AAGGACCAATAGGC 4304
Query 272 CACACTTTCATGGTTTGTATTCAC 295
|||||||||||||||| |||||||
Sbjct 4305 CACACTTTCATGGTTTTTATTCAC 4328
>seq7656
Length=643
Score = 212 bits (234), Expect = 1e-52
Identities = 117/117 (100%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 489
Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 205
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 432
>seq18585
Length=534
Score = 206 bits (228), Expect = 5e-51
Identities = 119/122 (98%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 122 TACTAAGCGGAATTACCATTGCGACGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 63
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 3
Query 121 AT 122
||
Sbjct 2 AT 1
>seq18586
Length=582
Score = 199 bits (220), Expect = 7e-49
Identities = 119/125 (95%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 523
Query 231 CCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTA 290
|||||||| | ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 522 CCTCTAGCTTTAAATTCTAAAGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTA 463
Query 291 TTCAC 295
|||||
Sbjct 462 TTCAC 458
>seq5195
Length=16122
Score = 192 bits (212), Expect = 1e-46
Identities = 133/151 (88%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201
||||||| ||||| || ||||||||||||| || |||||| | |||| ||||||| ||||
Sbjct 3275 AAGAGCCAACATCAAAAGATCAAAAAGCAATGTTGCTATGGATGCTTTGCTGCCAAAAGC 3216
Query 202 CAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGG 261
||||||||||||| ||||||||||||||||||||||| | ||||| | ||||||||||
Sbjct 3215 CAGTTATCCCTGTAGTAACTTTTCTGGCACCTCTAGCTTTAAATTCTAAAGGACTAAAGG 3156
Query 262 ATCGATAGGCCACACTTTCATGGTTTGTATT 292
|| ||||||||||||||||||||||| ||||
Sbjct 3155 ATTGATAGGCCACACTTTCATGGTTTATATT 3125
>seq20020
Length=285
Score = 156 bits (172), Expect = 7e-36
Identities = 88/89 (99%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 197 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 256
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||||||||||||||||||||||||
Sbjct 257 TAGTGGGTGAACAATCCAACGCTTACCGA 285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854210254848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |