Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01]
22,208 sequences; 65,184,451 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq18586 614 2e-173
seq9847 585 9e-165
>seq18586
Length=582
Score = 614 bits (680), Expect = 2e-173
Identities = 396/430 (92%), Gaps = 5/430 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 426 CTTTTGTTCTACTTGAGATTTCTGTTCTCAATGAGTCCCCCTTAGGACACCTGCGTTATT 367
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 366 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCAGATC 307
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||| ||||||||||| || |||| ||||||| ||||||||||||||||||||||||
Sbjct 306 AGCCCAAAAAGGACCTTAATGCTAGAAGATGGTCGATGAAGACCAGTTCCGCTTCATTGA 247
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
|||||||||||||||||| ||||||||||||||||| |||| | |||||||||||
Sbjct 246 ATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACTGGCGCTTA---CGCTCCCACTTA 190
Query 247 TTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305
||||||| ||||| | ||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 189 TTCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 131
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 CTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 71
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 11
Query 426 TTGGCTACCT 435
||||||||||
Sbjct 10 TTGGCTACCT 1
>seq9847
Length=14430
Score = 585 bits (648), Expect = 9e-165
Identities = 461/551 (84%), Gaps = 31/551 (6%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTT-------AGGACACCTG 59
|||||| |||| || ||||| |||||| |||||| |||||| |||||| |||
Sbjct 4360 CTTTTGGCCTACTTGATATTTCCGTTCTCAATGAGTGCCCCTTGGGCCTTAGGACATCTG 4419
Query 60 CGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAAC 119
| |||| ||| ||||||| ||| ||||||||||||||||||||||||||| ||
Sbjct 4420 CCTTATT-TTTCACAGATGCGCCACCCCAGCCAAACTCCCCACCTGACAATCTC------ 4472
Query 120 CCGGATCGGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCT 179
| |||| ||||||||||| | | ||| ||| || || |||| || |||
Sbjct 4473 ------CAGCCCCAAAAGGACCTTAATACTAAAAAGTGGGATGTTAATCCCAGCTCTGCT 4526
Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239
||||||| |||||||||| || |||| ||||||||||||||||| |||| | ||||
Sbjct 4527 TCATTGAATAAGTAAAAAGACAATAAAGGTAGTGGTATTTCACTGGCGCTTAC---GCTC 4583
Query 240 CCACTTATTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298
|||||||||||||||| ||| | ||| |||||||| ||| || |||||||||||||||
Sbjct 4584 CCACTTATTCTACACC-CTCTATGTCTTTTCACAATGTCAAACCTGAGTCAAGCTCAACA 4642
Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG------ 352
| ||||||||||||| |||||| |||||||| ||| |||||||||| |||||
Sbjct 4643 GTGTCTTCTTTCCCCACTGATTTTGCCAAGCCTGTTGTCTTGGCTGTGATTTCGGTTTTG 4702
Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 4703 CTAGATAGTAGATAGGGACAGTGAGAATCTTGTTAATCCATTCATGCGCGTCACTAATTA 4762
Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4763 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 4822
Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 4823 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAAC 4882
Query 533 ATCACTTTCTG 543
| |||||||||
Sbjct 4883 ACCACTTTCTG 4893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634836854784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |