Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq18585 289 5e-76 seq20020 129 1e-27 >seq18585 Length=534 Score = 289 bits (320), Expect = 5e-76 Identities = 234/278 (84%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||||||| |||||| ||||||||||||||||||||| |||| |||||| Sbjct 120 GTACGAGAGGAACCGCGGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 177 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| Sbjct 178 GCCGCGAAGCTACCATCTGCTGGATAATAGCTGAACGCCTCTAAGTTAGAATCCATGCCA 237 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 |||||||| |||| ||||| |||| ||||| |||||||||||||||||||||||| || Sbjct 238 GAACGGGGCGATTTTCTCCAGCACGTCGTACGAGGATACGAATAGGCTTCGGCCCCGGAC 297 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 ||||||||| | ||| || || |||| || | | | | || ||||| ||| Sbjct 298 CTTAGCAGGGC-ATAACTCCTCTCTCGTAGAAGTCGGGAGAGGT-AATTGCCGGATAGCA 355 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||| || |||| ||||| ||||||||||||||||| Sbjct 356 ATTTGACAGCGCGCTGGGATGAATCCTTTGCAGACGAC 393 >seq20020 Length=285 Score = 129 bits (142), Expect = 1e-27 Identities = 122/152 (80%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||| |||||||| |||||| ||||| || | |||| | Sbjct 167 GTACGAGAGGAACCGTTCA-TTCACG-TAATTGGTATTTGCGCCTGTCCGATCGGGCAAT 110 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| || |||||||||||||||||||||||||||| |||||||| ||| | Sbjct 109 GGCGCGAAGCTATCACGTGCTGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 50 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGT 152 ||| ||||| | ||| |||||| |||| Sbjct 49 GAA-ACAATGATTTTGTCCCGCACATGTTAGT 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819023757312