Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01]
22,208 sequences; 65,184,451 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq18585 289 5e-76
seq20020 129 1e-27
>seq18585
Length=534
Score = 289 bits (320), Expect = 5e-76
Identities = 234/278 (84%), Gaps = 4/278 (1%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||||||| |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 120 GTACGAGAGGAACCGCGGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 177
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 178 GCCGCGAAGCTACCATCTGCTGGATAATAGCTGAACGCCTCTAAGTTAGAATCCATGCCA 237
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
|||||||| |||| ||||| |||| ||||| |||||||||||||||||||||||| ||
Sbjct 238 GAACGGGGCGATTTTCTCCAGCACGTCGTACGAGGATACGAATAGGCTTCGGCCCCGGAC 297
Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240
||||||||| | ||| || || |||| || | | | | || ||||| |||
Sbjct 298 CTTAGCAGGGC-ATAACTCCTCTCTCGTAGAAGTCGGGAGAGGT-AATTGCCGGATAGCA 355
Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||| || |||| ||||| |||||||||||||||||
Sbjct 356 ATTTGACAGCGCGCTGGGATGAATCCTTTGCAGACGAC 393
>seq20020
Length=285
Score = 129 bits (142), Expect = 1e-27
Identities = 122/152 (80%), Gaps = 3/152 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| | |||| |||||||| |||||| ||||| || | |||| |
Sbjct 167 GTACGAGAGGAACCGTTCA-TTCACG-TAATTGGTATTTGCGCCTGTCCGATCGGGCAAT 110
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||| || |||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 109 GGCGCGAAGCTATCACGTGCTGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 50
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGT 152
||| ||||| | ||| |||||| ||||
Sbjct 49 GAA-ACAATGATTTTGTCCCGCACATGTTAGT 19
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819023757312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |