Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq19961 850 0.0 seq7640 695 0.0 seq8378 369 1e-99 >seq19961 Length=628 Score = 850 bits (942), Expect = 0.0 Identities = 493/505 (98%), Gaps = 2/505 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 95 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 154 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 155 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 214 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT-ACCATGGT 179 ||||||||||||||||||||||||||||||||||| |||| ||||||| | |||||||| Sbjct 215 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTCACCACCATGGT 274 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 275 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 334 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGG 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 335 ACAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCATTGG 394 Query 300 TTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTA 359 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 395 TTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGCTTTTAGCATGTATTAGCTCTA 454 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 455 GAATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 514 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 |||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| Sbjct 515 AGCCATTCGCAGTTTCACGGTATA-AATGCTTATACTTAGACATGCATGGCTTAATCTTT 573 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 574 GAGACAAGCATATGACTACTGGCAG 598 >seq7640 Length=6807 Score = 695 bits (770), Expect = 0.0 Identities = 460/506 (91%), Gaps = 3/506 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||| |||||||||||||||| | || |||||||||||||||||| Sbjct 1258 GTACTCATTCCAATTGTAAGACCCAAAAGAGCCATACATTGTTATTTATTGTCACTACCT 1199 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||||||||||||||||||||||||||||||| ||||| ||| || |||||| Sbjct 1198 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCAATCCTTAGATTTGAGGGCCGTT 1139 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||| | ||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 1138 TCTCAGGCCCTCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTCATCACCATGGTA 1079 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| Sbjct 1078 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCACCGGCA 1019 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| |||||||||||| |||||| | | |||||||| | ||||| Sbjct 1018 CAAGGCCATGCGATTCGAGAAGTTATTATGAGTCACCAGGAGGACCCGAAGGCCATTGGT 959 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAA-GTCGGGG-TTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||||||||||| || ||||||| |||| |||||||||||||||| Sbjct 958 TTTTTATCTAATAAATACACCCCTTCCAAAGGTCGGGGCTTTTCAGCATGTATTAGCTCT 899 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 898 AGAATTACCACAGTTATCCATGTAGTAAGGTATCATCAAATAAACTATAACTGATTTAAT 839 Query 419 GAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 838 GAGCCATTCGCAGTTTCACTGTATAG-TTGTTTATACTTAGACATGCATGGCTTAATCTT 780 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||| Sbjct 779 TGAGACAAGCATATGACTACTGGCAG 754 >seq8378 Length=1590 Score = 369 bits (408), Expect = 1e-99 Identities = 297/355 (84%), Gaps = 3/355 (1%) Strand=Plus/Plus Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 ||| ||| || |||||||||||||| | |||||||||||| |||||| |||| | ||| Sbjct 231 CTTAGATTTGAGGGCCGTTTCTCAGGCCCTCTCTCCGGAATCAAACCCTTATTCTCTGTT 290 Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221 || || ||||||||||||| ||||||||||||| ||||||||||||||||| ||| Sbjct 291 GCCTGTCATCACCATGGTAGGCCTCTATCCTACCATCAAAAGTTGATAGGGCAGATGTTT 350 Query 222 GAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG 281 ||||||| |||| ||||| |||||||||| |||| | |||| ||||||| |||||| | Sbjct 351 GAATGAAGCATCACCGGCACAAGGCCATGTGATTTGACAAGTCATTATGAGTCACCAGGA 410 Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAA-GTC-GGGGTT 339 | ||| |||| | |||||||| ||||| || |||||||||||| | || ||| ||| || Sbjct 411 GGACCCAAAGGCCATTGGTTTTATATCTGATGAATACACCCCTTTCAAAGGTCAGGGCTT 470 Query 340 TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAAT 399 || ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 471 TTCAGCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGTAAGGTATCATCAAAT 530 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 ||| | ||||||||| |||||||||| |||||||||||||||| ||| | ||| Sbjct 531 CAACTACAACTGATTTGTTGAGCCATTCACAGTTTCACTGTATAG-TTGTTCATA 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510064570368