Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq23 100 2e-16 seq10000 93.3 3e-14 >seq23 Length=7809 Score = 100 bits (110), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 61108 GCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGG 61167 || ||||||||||| ||||| | ||||| ||||| |||| || || ||| | |||||| Sbjct 2140 GCCGAAGCTTCCTTTTGGACAGCCGAGGAAATCGATCTGTCGAAGGATATGCACGACTGG 2199 Query 61168 GAGCGTTTATCGA---GCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCC 61224 || | | || | | || |||| ||||| |||||||| | || |||||||| Sbjct 2200 GATAATAAGTTGAATGGGGACGAGAAACACTTCATCAAACATGTCCTCGCTTTCTTTGCT 2259 Query 61225 GCTTCGGACGGTATCGTCAATGAGAA-TTTATTGGAACGTTTCGCGCAGGAGGTGCAAGT 61283 || || || || |||||||| ||||| | || | | |||| | | | || || ||| | Sbjct 2260 GCCTCCGATGGGATCGTCAACGAGAACCTCATCGAGAGGTTTAGTGGA-GAAGTTCAAAT 2318 Query 61284 GTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316 | || || || ||||||||||||||||| || Sbjct 2319 CGCTGAAGCTCGATGTTTCTACGGCTTCCAAAT 2351 >seq10000 Length=7706 Score = 93.3 bits (102), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 65807 AAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGT 65866 |||| ||| || || ||||| ||||| ||||| || |||||||| | || || || Sbjct 5395 AAAGCGTCAGCAAGTCCTTGTACTCCGATACCAATCGGACGATGTCTCATGTTCGACTTC 5336 Query 65867 CTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTG 65917 |||||||| || | |||||||||||||| |||||||| ||||||| |||| Sbjct 5335 CTCGCCTCTGGGATCGGGTAGTAATTGATGTCGATAATTCGATTCAGATTG 5285 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388 || || ||| ||| || |||||||| ||||| || ||||| || | || || ||||| Sbjct 4749 TCAACTCGAGACATGAAGAGATCAGGAATCCATAGCGCGTAAAACAAGTCCCGAGCTCGA 4690 Query 66389 TGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT 66448 || || | || |||||||| |||||||| | | || || | ||| || |||||| Sbjct 4689 CTTTCTTCCTTCCCATGATTTTTCCGCAAGTCCAACCAGTCGAACACGTCCGCGTGCCAT 4630 Query 66449 GGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504 || ||||||||||| || || | || | ||| ||| ||||| ||||| || Sbjct 4629 GGCTCCAGGTAGATTGCAAAGGCCCCGGGTCTCTTGTTGCCTCCTTGATCGACATA 4574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397460394245120