Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01]
24,639 sequences; 68,656,445 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq20407 486 3e-135
seq8501 248 2e-63
>seq20407
Length=645
Score = 486 bits (538), Expect = 3e-135
Identities = 296/314 (94%), Gaps = 0/314 (0%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
||||||||||||| ||||||| ||||||| || |||||||||||||||||||| |||||
Sbjct 154 TGGTCCGGCCGGGTCTTTCCTCCTGGGGAGCCACATGCCCTTCACTGGGTGTGTTGGGGA 213
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 214 ACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTATGCCTGAATACAT 273
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 274 TAGCATGGAATAATAAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 333
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 334 AATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 393
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 394 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAGTGA 453
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 454 ACGAAAGTTAGGGG 467
>seq8501
Length=6877
Score = 248 bits (274), Expect = 2e-63
Identities = 221/280 (79%), Gaps = 20/280 (7%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98
|||| ||| ||||||||| |||| |||||| ||||||||||||||||||||||||||
Sbjct 1518 ATGCACTTTACTGGGTGTTGGAGGGAACCAGGATTTTTACTTTGAAAAAATTAGAGTGTT 1577
Query 99 CAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158
|||||||||| ||||||||||| ||||||||||| | ||||
Sbjct 1578 CAAAGCAGGCT-------------------ATGGAATAATAAAATAGGACGTGTGATTCT 1618
Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218
||||||||||||||||||| |||||||||| ||||||| ||| ||||| | ||||
Sbjct 1619 ATTTTGTTGGTTTCTAGGATTACCGTAATGATGAATAGGGTCAGTTGGGGGCATTTGTAT 1678
Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278
| |||||||||||||||||||||||||| || ||||| ||||||||||||||| |
Sbjct 1679 TACATTGTCAGAGGTGAAATTCTTGGATTGATGTAAGACAAACTACTGCGAAAGCATCTG 1738
Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
||||||||| |||||| |||| ||||||| |||| |||
Sbjct 1739 CCAAGGATGACTTCATTGATCA-AGAACGAAGGTTAAGGG 1777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914974503872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |