Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq20408 722 0.0 seq22299 250 1e-63 seq22587 197 6e-48 seq22410 127 9e-27 seq22588 125 3e-26 >seq20408 Length=715 Score = 722 bits (800), Expect = 0.0 Identities = 527/603 (87%), Gaps = 9/603 (1%) Strand=Plus/Plus Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87 ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| | Sbjct 120 AGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCAT 179 Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 239 Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 ||||||||||||||||||||||| || ||||||||||||||||||||||| | ||||||| Sbjct 240 AGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGGGATTGCAAC 299 Query 208 CAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGT-CAGG 266 ||||||||| ||| || | || |||| | | ||||| |||| | ||| | |||| Sbjct 300 CAGACTTGCTCGCGGT-GTTCCGCCGGTCTTCTGACCGGTCTACTCGCC-GCGTTGCAGG 357 Query 267 CCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTG 326 |||||||| || | || | |||||| | | ||||||| || |||| ||| ||| Sbjct 358 CCAGCATCGTCTGGTGCCGCTGGATAA-GACTTGAGGAATGTAGCTCCCTC--GGGAGTG 414 Query 327 TTATAGCCCGGGGTGGAATGCGGCCCGC-CTGGACTGAGGTCCGCGCTCCGGCTAGGATG 385 |||||||| ||| |||| || || | ||||||||| ||||||| ||||||||||| Sbjct 415 TTATAGCCTCTTGTG--ATGCAGCGAGCGCCGGACTGAGGACCGCGCTTCGGCTAGGATG 472 Query 386 CTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTAT 445 ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 473 CTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTAT 532 Query 446 GCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGT 505 |||||||||||||||| |||||| | |||| |||||||||||||| ||||| |||||| | Sbjct 533 GCGAGTGTTTGGGTGTTAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAGAACCCAT 592 Query 506 GAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTG 565 |||| ||| ||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 593 AAGGGGGCATCATCGACCGATCCGGATGTCTTCGGATGGATTTGAGTAAGAGCAAGTATG 652 Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 712 Query 626 GGA 628 ||| Sbjct 713 GGA 715 >seq22299 Length=1420 Score = 250 bits (276), Expect = 1e-63 Identities = 178/204 (87%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 480 GAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG 539 ||||||||||| ||| | || | || ||| | |||||||||||||||| ||| Sbjct 1420 GAAAGTGAACGTAGGAGAGAGCTTC----GGCGCATCTCCGACCGATCCTGATGTTCTCG 1365 Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 1364 GATGGATTTGAGTAAGAGCATACGGGGCCGGACCCGAAAGATGGTGAACTATGCCTGAAT 1305 Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| Sbjct 1304 AGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGAT 1245 Query 660 CGTCAAATTTGGGTATAGGGGCGA 683 |||||||||||||||||||||||| Sbjct 1244 CGTCAAATTTGGGTATAGGGGCGA 1221 >seq22587 Length=273 Score = 197 bits (218), Expect = 6e-48 Identities = 150/176 (85%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||||||||||||||||||| || |||| |||||||| | ||||| ||||||| Sbjct 24 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAAT 83 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || ||||||||||||| ||||||| |||| ||||||||||||| ||||||||| Sbjct 84 ATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAA 143 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTG 215 |||||||| || || ||||||||||||| |||||||| | |||| | ||||||| Sbjct 144 AGAGAGTT-AACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTG 198 >seq22410 Length=483 Score = 127 bits (140), Expect = 9e-27 Identities = 118/147 (80%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||| || ||||| |||| |||| |||||| | | ||||| ||||||| Sbjct 287 GAGTCGGTTTGCTTGAGAGTGCAGACCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 346 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| |||||||||||| |||||||| |||| ||||| ||||||| |||||| | Sbjct 347 AT-GACCACGAGACCGATAGCACACAAGTACCGTGAGGGAAAGGTGAAAAGAACTTTGAA 405 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTG 185 |||||||| || || |||||||| || Sbjct 406 GAGAGAGTTCAAGAGTACGTGAAACTG 432 >seq22588 Length=218 Score = 125 bits (138), Expect = 3e-26 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 |||||| ||| ||||| | | ||| | ||||||||| |||||||||||||||||||||| Sbjct 102 AGGATGTTGGTGTAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC 161 Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTG 496 || ||| ||| ||||||||| |||||| | |||| |||||||||||||| ||||| Sbjct 162 ATGCTTGCAAGTATTTGGGTGTTAAACCCATACGCGGAATGAAAGTGAACGTAGGTG 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079471493450