Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01]
24,639 sequences; 68,656,445 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq20408 722 0.0
seq22299 250 1e-63
seq22587 197 6e-48
seq22410 127 9e-27
seq22588 125 3e-26
>seq20408
Length=715
Score = 722 bits (800), Expect = 0.0
Identities = 527/603 (87%), Gaps = 9/603 (1%)
Strand=Plus/Plus
Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87
||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
Sbjct 120 AGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCAT 179
Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 239
Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207
||||||||||||||||||||||| || ||||||||||||||||||||||| | |||||||
Sbjct 240 AGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGGGATTGCAAC 299
Query 208 CAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGT-CAGG 266
||||||||| ||| || | || |||| | | ||||| |||| | ||| | ||||
Sbjct 300 CAGACTTGCTCGCGGT-GTTCCGCCGGTCTTCTGACCGGTCTACTCGCC-GCGTTGCAGG 357
Query 267 CCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTG 326
|||||||| || | || | |||||| | | ||||||| || |||| ||| |||
Sbjct 358 CCAGCATCGTCTGGTGCCGCTGGATAA-GACTTGAGGAATGTAGCTCCCTC--GGGAGTG 414
Query 327 TTATAGCCCGGGGTGGAATGCGGCCCGC-CTGGACTGAGGTCCGCGCTCCGGCTAGGATG 385
|||||||| ||| |||| || || | ||||||||| ||||||| |||||||||||
Sbjct 415 TTATAGCCTCTTGTG--ATGCAGCGAGCGCCGGACTGAGGACCGCGCTTCGGCTAGGATG 472
Query 386 CTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTAT 445
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 473 CTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTAT 532
Query 446 GCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGT 505
|||||||||||||||| |||||| | |||| |||||||||||||| ||||| |||||| |
Sbjct 533 GCGAGTGTTTGGGTGTTAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAGAACCCAT 592
Query 506 GAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTG 565
|||| ||| ||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 593 AAGGGGGCATCATCGACCGATCCGGATGTCTTCGGATGGATTTGAGTAAGAGCAAGTATG 652
Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 712
Query 626 GGA 628
|||
Sbjct 713 GGA 715
>seq22299
Length=1420
Score = 250 bits (276), Expect = 1e-63
Identities = 178/204 (87%), Gaps = 4/204 (2%)
Strand=Plus/Minus
Query 480 GAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG 539
||||||||||| ||| | || | || ||| | |||||||||||||||| |||
Sbjct 1420 GAAAGTGAACGTAGGAGAGAGCTTC----GGCGCATCTCCGACCGATCCTGATGTTCTCG 1365
Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1364 GATGGATTTGAGTAAGAGCATACGGGGCCGGACCCGAAAGATGGTGAACTATGCCTGAAT 1305
Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659
||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||
Sbjct 1304 AGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGAT 1245
Query 660 CGTCAAATTTGGGTATAGGGGCGA 683
||||||||||||||||||||||||
Sbjct 1244 CGTCAAATTTGGGTATAGGGGCGA 1221
>seq22587
Length=273
Score = 197 bits (218), Expect = 6e-48
Identities = 150/176 (85%), Gaps = 1/176 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||||||||||||||||||||||||| || |||| |||||||| | ||||| |||||||
Sbjct 24 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAAT 83
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
|| || ||||||||||||| ||||||| |||| ||||||||||||| |||||||||
Sbjct 84 ATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAA 143
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTG 215
|||||||| || || ||||||||||||| |||||||| | |||| | |||||||
Sbjct 144 AGAGAGTT-AACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTG 198
>seq22410
Length=483
Score = 127 bits (140), Expect = 9e-27
Identities = 118/147 (80%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| ||| ||| || ||||| |||| |||| |||||| | | ||||| |||||||
Sbjct 287 GAGTCGGTTTGCTTGAGAGTGCAGACCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 346
Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
|| | ||| |||||||||||| |||||||| |||| ||||| ||||||| |||||| |
Sbjct 347 AT-GACCACGAGACCGATAGCACACAAGTACCGTGAGGGAAAGGTGAAAAGAACTTTGAA 405
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTG 185
|||||||| || || |||||||| ||
Sbjct 406 GAGAGAGTTCAAGAGTACGTGAAACTG 432
>seq22588
Length=218
Score = 125 bits (138), Expect = 3e-26
Identities = 98/117 (84%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439
|||||| ||| ||||| | | ||| | ||||||||| ||||||||||||||||||||||
Sbjct 102 AGGATGTTGGTGTAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC 161
Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTG 496
|| ||| ||| ||||||||| |||||| | |||| |||||||||||||| |||||
Sbjct 162 ATGCTTGCAAGTATTTGGGTGTTAAACCCATACGCGGAATGAAAGTGAACGTAGGTG 218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079471493450
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |