Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01]
24,639 sequences; 68,656,445 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq10869 221 2e-55
seq8517 208 1e-51
seq20410 199 7e-49
seq20409 196 8e-48
seq5740 183 5e-44
seq22189 156 7e-36
>seq10869
Length=14506
Score = 221 bits (244), Expect = 2e-55
Identities = 205/264 (78%), Gaps = 21/264 (8%)
Strand=Plus/Plus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91
||||||||||||||| | ||| ||||||| || ||||||||||| ||||| ||||| ||
Sbjct 4162 CATCAGTAGGGTAAACCCAACTTGTCTCACAACAGTCTAAACCCACCTCACTTTCCCCAT 4221
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
| ||||||||||||||| | || || |||||||||| || |||||| |||||| |||
Sbjct 4222 TGGTGGGTGAACAATCCTGCACTGGCCAAATTCTGCTTTGGCATGATAAGAAGAGTTGAC 4281
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
|| |||| | |||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 4282 ATTGAAGCACCAAAAAGCAATGTTGCTATGAATGCTTGGCTGCCACAAGCCAGTTATCCA 4341
Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271
| |||||| |||||| | |||| ||||| | ||||||
Sbjct 4342 T--------------------TCTAGCTCTAAATTTTAAAAGACT-AAGGACCAATAGGC 4380
Query 272 CACACTTTCATGGTTTGTATTCAC 295
|||||||||||||||| |||||||
Sbjct 4381 CACACTTTCATGGTTTTTATTCAC 4404
>seq8517
Length=644
Score = 208 bits (230), Expect = 1e-51
Identities = 115/115 (100%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 488
Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 203
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 433
>seq20410
Length=584
Score = 199 bits (220), Expect = 7e-49
Identities = 119/125 (95%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 525
Query 231 CCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTA 290
|||||||| | ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 524 CCTCTAGCTTTAAATTCTAAAGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTA 465
Query 291 TTCAC 295
|||||
Sbjct 464 TTCAC 460
>seq20409
Length=535
Score = 196 bits (216), Expect = 8e-48
Identities = 117/123 (95%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TACTAAGCTGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 64
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||
Sbjct 63 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGCGA 4
Query 121 ATT 123
|||
Sbjct 3 ATT 1
>seq5740
Length=5777
Score = 183 bits (202), Expect = 5e-44
Identities = 131/151 (87%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201
||||||| ||||| || ||||||||||||| || |||||| | |||| ||||||| ||||
Sbjct 3279 AAGAGCCAACATCAAAAGATCAAAAAGCAATGTTGCTATGGATGCTTTGCTGCCAAAAGC 3220
Query 202 CAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGG 261
||||||||||||| ||||||||||||| ||||||||| | ||||| | ||||| ||||
Sbjct 3219 CAGTTATCCCTGTAGTAACTTTTCTGGTACCTCTAGCTTTAAATTCTAAAGGACTCAAGG 3160
Query 262 ATCGATAGGCCACACTTTCATGGTTTGTATT 292
|| ||||||||||||||||||||||| ||||
Sbjct 3159 ATTGATAGGCCACACTTTCATGGTTTATATT 3129
>seq22189
Length=255
Score = 156 bits (172), Expect = 7e-36
Identities = 88/89 (99%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 167 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 226
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||||||||||||||||||||||||
Sbjct 227 TAGTGGGTGAACAATCCAACGCTTACCGA 255
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854189484384
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |