Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq10869 221 2e-55 seq8517 208 1e-51 seq20410 199 7e-49 seq20409 196 8e-48 seq5740 183 5e-44 seq22189 156 7e-36 >seq10869 Length=14506 Score = 221 bits (244), Expect = 2e-55 Identities = 205/264 (78%), Gaps = 21/264 (8%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||| | ||| ||||||| || ||||||||||| ||||| ||||| || Sbjct 4162 CATCAGTAGGGTAAACCCAACTTGTCTCACAACAGTCTAAACCCACCTCACTTTCCCCAT 4221 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 | ||||||||||||||| | || || |||||||||| || |||||| |||||| ||| Sbjct 4222 TGGTGGGTGAACAATCCTGCACTGGCCAAATTCTGCTTTGGCATGATAAGAAGAGTTGAC 4281 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || |||| | |||||||||| || |||||||| |||||||||||||||||||||||||| Sbjct 4282 ATTGAAGCACCAAAAAGCAATGTTGCTATGAATGCTTGGCTGCCACAAGCCAGTTATCCA 4341 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 | |||||| |||||| | |||| ||||| | |||||| Sbjct 4342 T--------------------TCTAGCTCTAAATTTTAAAAGACT-AAGGACCAATAGGC 4380 Query 272 CACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||| ||||||| Sbjct 4381 CACACTTTCATGGTTTTTATTCAC 4404 >seq8517 Length=644 Score = 208 bits (230), Expect = 1e-51 Identities = 115/115 (100%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 547 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 488 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 203 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 487 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 433 >seq20410 Length=584 Score = 199 bits (220), Expect = 7e-49 Identities = 119/125 (95%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 584 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 525 Query 231 CCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTA 290 |||||||| | ||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 524 CCTCTAGCTTTAAATTCTAAAGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTA 465 Query 291 TTCAC 295 ||||| Sbjct 464 TTCAC 460 >seq20409 Length=535 Score = 196 bits (216), Expect = 8e-48 Identities = 117/123 (95%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 TACTAAGCTGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 64 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| Sbjct 63 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGCGA 4 Query 121 ATT 123 ||| Sbjct 3 ATT 1 >seq5740 Length=5777 Score = 183 bits (202), Expect = 5e-44 Identities = 131/151 (87%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 ||||||| ||||| || ||||||||||||| || |||||| | |||| ||||||| |||| Sbjct 3279 AAGAGCCAACATCAAAAGATCAAAAAGCAATGTTGCTATGGATGCTTTGCTGCCAAAAGC 3220 Query 202 CAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGG 261 ||||||||||||| ||||||||||||| ||||||||| | ||||| | ||||| |||| Sbjct 3219 CAGTTATCCCTGTAGTAACTTTTCTGGTACCTCTAGCTTTAAATTCTAAAGGACTCAAGG 3160 Query 262 ATCGATAGGCCACACTTTCATGGTTTGTATT 292 || ||||||||||||||||||||||| |||| Sbjct 3159 ATTGATAGGCCACACTTTCATGGTTTATATT 3129 >seq22189 Length=255 Score = 156 bits (172), Expect = 7e-36 Identities = 88/89 (99%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 167 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 226 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||| Sbjct 227 TAGTGGGTGAACAATCCAACGCTTACCGA 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854189484384