Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq20410 596 5e-168 seq10869 589 7e-166 >seq20410 Length=584 Score = 596 bits (660), Expect = 5e-168 Identities = 395/432 (91%), Gaps = 7/432 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 428 CTTTTGTTCTACTTGAGATTTCTGTTCTCAATGAGTCCCCCTTAGGACACCTGCGTTATT 369 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 368 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCAGATC 309 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGG-TCGGTGAAGACC-AGTTCCGCTTCATT 184 |||| ||||||||||| || |||| ||| ||| |||||||| |||||||||||||| Sbjct 308 AGCCCAAAAAGGACCTTAATGCTAGAAGTTGGGTCGATGAAGACCCAGTTCCGCTTCATT 249 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 || |||||||||||||||||| ||||||||||||||||| |||| | ||||||||| Sbjct 248 GAATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACTGGCGCTTAC---GCTCCCACT 192 Query 245 TATTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 ||||||||||| ||| | ||| |||||||| ||| |||||||||||||||||||||||| Sbjct 191 TATTCTACACC-CTCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTC 133 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 132 TTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 73 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 72 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 13 Query 424 ATTTGGCTACCT 435 |||||||||||| Sbjct 12 ATTTGGCTACCT 1 >seq10869 Length=14506 Score = 589 bits (652), Expect = 7e-166 Identities = 463/551 (84%), Gaps = 30/551 (5%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTT-------AGGACACCTG 59 |||||| |||| || ||||| |||||| |||||| |||||| |||||| ||| Sbjct 4436 CTTTTGGCCTACTTGATATTTCCGTTCTCAATGAGTGCCCCTTGGGCCTTAGGACATCTG 4495 Query 60 CGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAAC 119 | |||| ||| ||||||| ||| ||||||||||||||||||||||||||| || || | Sbjct 4496 CCTTATT-TTTCACAGATGCGCCACCCCAGCCAAACTCCCCACCTGACAATCTC--CAGC 4552 Query 120 CCGGATCGGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCT 179 || | ||||||||||| | | ||| ||| || || |||| || ||| Sbjct 4553 CCCAAA---------AAGGACCTTAATACTAAAAAGTGGGATGTTAATCCCAGCTCTGCT 4603 Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 ||||||| |||||||||| || |||| ||||||||||||||||| |||| | |||| Sbjct 4604 TCATTGAATAAGTAAAAAGACAATAAAGGTAGTGGTATTTCACTGGCGCTTAC---GCTC 4660 Query 240 CCACTTATTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 |||||||||||||||| ||| | ||| |||||||| ||| || ||||||||||||||| Sbjct 4661 CCACTTATTCTACACC-CTCTATGTCTTTTCACAATGTCAAACCTGAGTCAAGCTCAACA 4719 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG------ 352 | ||||||||||||| |||||| |||||||| ||| |||||||||| ||||| Sbjct 4720 GTGTCTTCTTTCCCCACTGATTTTGCCAAGCCTGTTGTCTTGGCTGTGATTTCGGTTTTG 4779 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 4780 CTAGATAGTAGATAGGGACAGTGAGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 4839 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4840 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 4899 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 4900 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAAC 4959 Query 533 ATCACTTTCTG 543 | ||||||||| Sbjct 4960 ACCACTTTCTG 4970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634797103072