Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01]
24,639 sequences; 68,656,445 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq20409 284 2e-74
seq22189 122 1e-25
>seq20409
Length=535
Score = 284 bits (314), Expect = 2e-74
Identities = 233/278 (84%), Gaps = 4/278 (1%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||||||| |||||||
Sbjct 121 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACAAGGCAGT 178
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 179 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTTAGAATCCATGCCA 238
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| || |||| |||| |||| ||||| |||||||||||||||||||||||| ||
Sbjct 239 GAACGCGGCGATTTCCTCCAGCACGTCGTACGAGGATACGAATAGGCTTCGGCCCCGGAC 298
Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240
||||||||| | ||| || || |||| || | | | | || ||||| |||
Sbjct 299 CTTAGCAGGGC-ATAACTCCTCTCTCGTAGAAGTCGGGAGAGGT-AATTGCCGGATAGCA 356
Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||| || |||| ||||| |||||||||||||||||
Sbjct 357 ATTTGACAGCGCGCTGGGATGAATCCTTTGCAGACGAC 394
>seq22189
Length=255
Score = 122 bits (134), Expect = 1e-25
Identities = 102/123 (83%), Gaps = 4/123 (3%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| | ||| |||||||| |||||| ||||| || | |||| |
Sbjct 137 GTACGAGAGGAACCGTTCA-TTCG---TAATTGGTATTTGCGCCTGTCCGATCGGGCAAT 82
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||| || |||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 81 GGCGCGAAGCTATCACGTGCTGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 22
Query 121 GAA 123
|||
Sbjct 21 GAA 19
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819004464896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |