Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01]
24,639 sequences; 68,656,445 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq22112 830 0.0
seq8501 682 0.0
seq9322 369 1e-99
seq22469 167 7e-39
>seq22112
Length=617
Score = 830 bits (920), Expect = 0.0
Identities = 489/504 (97%), Gaps = 3/504 (1%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 154
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 214
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||
Sbjct 215 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTGCCACCATGGTA 274
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 GGCCAATATCC-ACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCA 333
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 334 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCATTGGT 393
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 394 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGCTTTTAGCATGTATTAGCTCTAG 453
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 454 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 513
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 514 GCCATTCGCAGTTTCACGGTATA-AATGCTTATACTTAGACATGCATGGCTTAATCTTTG 572
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||| | ||||||||
Sbjct 573 AGACAAGCATATGTC-ACTGGCAG 595
>seq8501
Length=6877
Score = 682 bits (756), Expect = 0.0
Identities = 458/506 (91%), Gaps = 4/506 (1%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||| |||||||||||||||| | || ||||||||||||||||||
Sbjct 1326 GTACTCATTCCAATTGTAAGACCCAAAAGAGCCATACATTGTTATTTATTGTCACTACCT 1267
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||||||||||||||||||||||||||||||| ||||| ||| || ||||||
Sbjct 1266 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCAATCCTTAGATTTGAGGGCCGTT 1207
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||| | ||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1206 TCTCAGGCCCTCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTCATCACCATGGTA 1147
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||| ||||||||||||||||||||||||||||||| ||||||||||| |||| |||||
Sbjct 1146 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCACCGGCA 1087
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||||||||||||| |||||||||||| |||||| | | |||||||| | ||||
Sbjct 1086 CAAGGCCATGCGATTCGAGAAGTTATTATGAGTCACCAGGAGGACCCGAAGGCCATTGG- 1028
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAA-GTCGGGG-TTTTTAGCATGTATTAGCTCT 358
||||||||||||||||||||||||||| || ||||||| |||| ||||||||||||||||
Sbjct 1027 TTTTTATCTAATAAATACACCCCTTCCAAAGGTCGGGGCTTTTCAGCATGTATTAGCTCT 968
Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418
||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 967 AGAATTACCACAGTTATCCATGTAGTAAGGTATCATCAAATAAACTATAACTGATTTAAT 908
Query 419 GAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478
||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 907 GAGCCATTCACAGTTTCACTGTATAG-TTGTTTATACTTAGACATGCATGGCTTAATCTT 849
Query 479 TGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||
Sbjct 848 TGAGACAAGCATATGACTACTGGCAG 823
>seq9322
Length=1749
Score = 369 bits (408), Expect = 1e-99
Identities = 297/355 (84%), Gaps = 3/355 (1%)
Strand=Plus/Plus
Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161
||| ||| || |||||||||||||| | |||||||||||| |||||| |||| | |||
Sbjct 232 CTTAGATTTGAGGGCCGTTTCTCAGGCCCTCTCTCCGGAATCAAACCCTTATTCTCTGTT 291
Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221
|| || ||||||||||||| ||||||||||||| ||||||||||||||||| |||
Sbjct 292 GCCTGTCATCACCATGGTAGGCCTCTATCCTACCATCAAAAGTTGATAGGGCAGATGTTT 351
Query 222 GAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG 281
||||||| |||| ||||| |||||||||| |||| | |||| ||||||| |||||| |
Sbjct 352 GAATGAAGCATCACCGGCACAAGGCCATGTGATTTGACAAGTCATTATGAGTCACCAGGA 411
Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAA-GTC-GGGGTT 339
| ||| |||| | |||||||| ||||| || |||||||||||| | || ||| ||| ||
Sbjct 412 GGACCCAAAGGCCATTGGTTTTATATCTGATGAATACACCCCTTTCAAAGGTCAGGGCTT 471
Query 340 TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAAT 399
|| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 472 TTCAGCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGTAAGGTATCATCAAAT 531
Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454
||| | ||||||||| |||||||||| |||||||||||||||| ||| | |||
Sbjct 532 CAACTACAACTGATTTGTTGAGCCATTCACAGTTTCACTGTATAG-TTGTTCATA 585
>seq22469
Length=269
Score = 167 bits (184), Expect = 7e-39
Identities = 136/164 (83%), Gaps = 1/164 (1%)
Strand=Plus/Minus
Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400
|| |||||||||||||| || ||| || | |||||||| ||| ||||| ||| | |
Sbjct 199 TTGGCATGTATTAGCTCCAGTATTTCCGCAGTTATCCAAGTAACTGGGTACGATCTATTG 140
Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460
||| ||||||||| ||||||||| | ||| ||||||| || | | |||| |||||||
Sbjct 139 AACCATAACTGATATAATGAGCCTTCCGCGGTTTCACCTTAATG-TGGCTTGCACTTAGA 81
Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 37
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510027852544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |