Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq22112 830 0.0 seq8501 682 0.0 seq9322 369 1e-99 seq22469 167 7e-39 >seq22112 Length=617 Score = 830 bits (920), Expect = 0.0 Identities = 489/504 (97%), Gaps = 3/504 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 95 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 154 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 155 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 214 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| Sbjct 215 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTGCCACCATGGTA 274 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 275 GGCCAATATCC-ACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCA 333 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 334 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCATTGGT 393 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 394 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGCTTTTAGCATGTATTAGCTCTAG 453 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 454 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 513 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| Sbjct 514 GCCATTCGCAGTTTCACGGTATA-AATGCTTATACTTAGACATGCATGGCTTAATCTTTG 572 Query 481 AGACAAGCATATGACTACTGGCAG 504 ||||||||||||| | |||||||| Sbjct 573 AGACAAGCATATGTC-ACTGGCAG 595 >seq8501 Length=6877 Score = 682 bits (756), Expect = 0.0 Identities = 458/506 (91%), Gaps = 4/506 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||| |||||||||||||||| | || |||||||||||||||||| Sbjct 1326 GTACTCATTCCAATTGTAAGACCCAAAAGAGCCATACATTGTTATTTATTGTCACTACCT 1267 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||||||||||||||||||||||||||||||| ||||| ||| || |||||| Sbjct 1266 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCAATCCTTAGATTTGAGGGCCGTT 1207 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||| | ||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 1206 TCTCAGGCCCTCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTCATCACCATGGTA 1147 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| Sbjct 1146 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCACCGGCA 1087 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| |||||||||||| |||||| | | |||||||| | |||| Sbjct 1086 CAAGGCCATGCGATTCGAGAAGTTATTATGAGTCACCAGGAGGACCCGAAGGCCATTGG- 1028 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAA-GTCGGGG-TTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||||||||||| || ||||||| |||| |||||||||||||||| Sbjct 1027 TTTTTATCTAATAAATACACCCCTTCCAAAGGTCGGGGCTTTTCAGCATGTATTAGCTCT 968 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 967 AGAATTACCACAGTTATCCATGTAGTAAGGTATCATCAAATAAACTATAACTGATTTAAT 908 Query 419 GAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 ||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 907 GAGCCATTCACAGTTTCACTGTATAG-TTGTTTATACTTAGACATGCATGGCTTAATCTT 849 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||| Sbjct 848 TGAGACAAGCATATGACTACTGGCAG 823 >seq9322 Length=1749 Score = 369 bits (408), Expect = 1e-99 Identities = 297/355 (84%), Gaps = 3/355 (1%) Strand=Plus/Plus Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 ||| ||| || |||||||||||||| | |||||||||||| |||||| |||| | ||| Sbjct 232 CTTAGATTTGAGGGCCGTTTCTCAGGCCCTCTCTCCGGAATCAAACCCTTATTCTCTGTT 291 Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221 || || ||||||||||||| ||||||||||||| ||||||||||||||||| ||| Sbjct 292 GCCTGTCATCACCATGGTAGGCCTCTATCCTACCATCAAAAGTTGATAGGGCAGATGTTT 351 Query 222 GAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG 281 ||||||| |||| ||||| |||||||||| |||| | |||| ||||||| |||||| | Sbjct 352 GAATGAAGCATCACCGGCACAAGGCCATGTGATTTGACAAGTCATTATGAGTCACCAGGA 411 Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAA-GTC-GGGGTT 339 | ||| |||| | |||||||| ||||| || |||||||||||| | || ||| ||| || Sbjct 412 GGACCCAAAGGCCATTGGTTTTATATCTGATGAATACACCCCTTTCAAAGGTCAGGGCTT 471 Query 340 TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAAT 399 || ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 472 TTCAGCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGTAAGGTATCATCAAAT 531 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 ||| | ||||||||| |||||||||| |||||||||||||||| ||| | ||| Sbjct 532 CAACTACAACTGATTTGTTGAGCCATTCACAGTTTCACTGTATAG-TTGTTCATA 585 >seq22469 Length=269 Score = 167 bits (184), Expect = 7e-39 Identities = 136/164 (83%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400 || |||||||||||||| || ||| || | |||||||| ||| ||||| ||| | | Sbjct 199 TTGGCATGTATTAGCTCCAGTATTTCCGCAGTTATCCAAGTAACTGGGTACGATCTATTG 140 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 ||| ||||||||| ||||||||| | ||| ||||||| || | | |||| ||||||| Sbjct 139 AACCATAACTGATATAATGAGCCTTCCGCGGTTTCACCTTAATG-TGGCTTGCACTTAGA 81 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 80 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 37 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510027852544