Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq6851 246 5e-63 seq9308 113 7e-23 >seq6851 Length=6801 Score = 246 bits (272), Expect = 5e-63 Identities = 190/222 (86%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 8 GGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTG 67 ||||||||||||| ||||||| ||| |||||| ||||||||||| ||| |||||||| Sbjct 2344 GGGCAGGGACGTAATCAACGCATGCT-GATGACATACGCTTACTAGGTATT-CCTCGTTG 2287 Query 68 AAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGA 126 |||| ||| |||||||||| |||||||||||||||| || ||||| |||||||||| Sbjct 2286 AAGAGCAATAATTGCAATGCTCTATCCCCATCACGACCAAGTTTCACAAGATTACCCAAT 2227 Query 127 CCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 186 | | || | ||||||||| ||||| || | |||||||||||||||||||||||||| Sbjct 2226 CTTTTCAGATAAGGTGATATACTCGCTGGCTTGGTCAGTGTAGCGCGCGTGCGGCCCAGA 2167 Query 187 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||| ||||||| Sbjct 2166 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 2125 >seq9308 Length=10155 Score = 113 bits (124), Expect = 7e-23 Identities = 84/96 (88%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| ||||||||||| ||| | Sbjct 6371 GTACAAAGGGCAGGGACGTAATCAACGCATGCT-GATGACATACGCTTACTAGGTATT-C 6428 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCC 96 ||||||||||| ||| |||||||||| ||||||||| Sbjct 6429 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCC 6464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751852420470