Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01]
20,258 sequences; 69,592,563 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq16572 176 3e-42
seq6851 82.4 4e-14
>seq16572
Length=643
Score = 176 bits (194), Expect = 3e-42
Identities = 109/117 (93%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| |||||||||||||||||||||||||||| |||| || ||||| |||||
Sbjct 583 GAACCCAAAAACTTTGATTTCTCGTAAGGTGCCGAGCGGGTCATCATAGTAACACCGCCC 524
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 523 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 467
>seq6851
Length=6801
Score = 82.4 bits (90), Expect = 4e-14
Identities = 73/90 (81%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 28 GGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTT 87
|||||| | | ||||| || | | | | | | |||||| |||||||||||||||| |||
Sbjct 1796 GGTGCCAAACAAGTCATTATAA-ATCCTTGTCTGATCCCCAGTCGGCATAGTTTACTGTT 1738
Query 88 AAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||| ||||||||||||||| || ||
Sbjct 1737 AAGACTACAACGGTATCTGATCGTTTTTGA 1708
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278347126620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |