Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq16572 176 3e-42 seq6851 82.4 4e-14 >seq16572 Length=643 Score = 176 bits (194), Expect = 3e-42 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| |||||||||||||||||||||||||||| |||| || ||||| ||||| Sbjct 583 GAACCCAAAAACTTTGATTTCTCGTAAGGTGCCGAGCGGGTCATCATAGTAACACCGCCC 524 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 523 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 467 >seq6851 Length=6801 Score = 82.4 bits (90), Expect = 4e-14 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 28 GGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTT 87 |||||| | | ||||| || | | | | | | |||||| |||||||||||||||| ||| Sbjct 1796 GGTGCCAAACAAGTCATTATAA-ATCCTTGTCTGATCCCCAGTCGGCATAGTTTACTGTT 1738 Query 88 AAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| ||||||||||||||| || || Sbjct 1737 AAGACTACAACGGTATCTGATCGTTTTTGA 1708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278347126620