Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01]
20,258 sequences; 69,592,563 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq18181 742 0.0
seq16573 708 0.0
seq18430 197 6e-48
>seq18181
Length=2262
Score = 742 bits (822), Expect = 0.0
Identities = 577/674 (86%), Gaps = 15/674 (2%)
Strand=Plus/Minus
Query 14 GCCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72
||| |||| ||| |||||||||||||||||||||| |||||||||||| |||| |||||
Sbjct 1885 GCCAAGCCTATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATG 1826
Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1825 GGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 1766
Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192
|||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||
Sbjct 1765 GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAG 1706
Query 193 GGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCAC 251
|||||||| | |||||||||| | | || ||| || || ||| || |||||||
Sbjct 1705 GGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTC-GCTGGTGCAC 1647
Query 252 TCTTCTGCGGTCAGGCCAGCATCAGCTCGG-GCGGTCGGATAAAGGCCCCGGGAATGTGG 310
| | | | | |||||||||||||| | || |||| |||||||||| |||||||||||
Sbjct 1646 TTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGG-GGGATAAAGGCTTCGGGAATGTGG 1588
Query 311 CCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGC 370
| |||| ||| ||||||||||||| ||| ||| | |||| |||||||||| |||
Sbjct 1587 CTCCCT--CGGGAGTGTTATAGCCCGTTGTGTAATACCCTGCGCC-GGACTGAGGTACGC 1531
Query 371 GCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAG 430
||||| || ||||||||||||||||||| | |||| ||||||||| |||||||||||||
Sbjct 1530 GCTCC-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAG 1472
Query 431 GAGTCTAACATC-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAAC 489
||||| | || |||||||||||| |||||| |||||| | ||||||||||||||||||
Sbjct 1471 GAGTC-GTCTTCGTATGCGAGTGTTCGGGTGTAAAACCCCTACGCGTAATGAAAGTGAAC 1413
Query 490 GGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTG 549
| ||||| || | || ||| ||||||||||||||||||| |||||||||||||
Sbjct 1412 GCAGGTGAGA----GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTG 1357
Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609
|||||||||||| | |||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1356 AGTAAGAGCATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGC 1297
Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1296 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT 1237
Query 670 GGGTATAGGGGCGA 683
||||||||||||||
Sbjct 1236 GGGTATAGGGGCGA 1223
>seq16573
Length=715
Score = 708 bits (784), Expect = 0.0
Identities = 524/603 (87%), Gaps = 9/603 (1%)
Strand=Plus/Plus
Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 120 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCAT 179
Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTAAAGCTAAATACTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 239
Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 AGCACTTTGAAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGAC 299
Query 208 CAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGT-CAGG 266
|||||| ||| ||| | || |||| | | ||||| |||| | ||| | ||||
Sbjct 300 CAGACTCGCCTCCAGG-GTTCCGCCGGTCTTCTGACCGGTCTACTCGCC-GCGTTGCAGG 357
Query 267 CCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTG 326
|||||||| || | || | |||||| | | ||||||| || |||| ||| |||
Sbjct 358 CCAGCATCGTCTGGTGCCGCTGGATAA-GACTTGAGGAATGTAGCTCCCTC--GGGAGTG 414
Query 327 TTATAGCCCGGGGTGGAATGCGGCCCGC-CTGGACTGAGGTCCGCGCTCCGGCTAGGATG 385
|||||||| ||| |||| || || | ||||||||| ||||||| |||| ||| |
Sbjct 415 TTATAGCCTCTTGTG--ATGCAGCGAGCGCCGGACTGAGGACCGCGCTTCGGCACGGACG 472
Query 386 CTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTAT 445
||||| ||||||| |||| || ||||||||| |||||||||||||||||||||||||||
Sbjct 473 CTGGCATAATGGTCGTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTAC 532
Query 446 GCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGT 505
||||||||| ||||||||||||||| |||| | |||||| |||||||||||||| ||| |
Sbjct 533 GCGAGTGTTCGGGTGTCAAACCCGTACGCGCAGTGAAAGCGAACGGAGGTGGGAGCCCAT 592
Query 506 GAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTG 565
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 593 AAGGGCGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCGTAGATG 652
Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 712
Query 626 GGA 628
|||
Sbjct 713 GGA 715
>seq18430
Length=242
Score = 197 bits (218), Expect = 6e-48
Identities = 150/176 (85%), Gaps = 1/176 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||||||||||||||||||||||||| || |||| |||||||| | ||||| |||||||
Sbjct 65 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAAT 124
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
|| || ||||||||||||| ||||||| |||| ||||||||||||| |||||||||
Sbjct 125 ATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAA 184
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTG 215
|||||||| || || ||||||||||||| |||||||| | |||| | |||||||
Sbjct 185 AGAGAGTT-AACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTG 239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079565465900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |