Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq18181 742 0.0 seq16573 708 0.0 seq18430 197 6e-48 >seq18181 Length=2262 Score = 742 bits (822), Expect = 0.0 Identities = 577/674 (86%), Gaps = 15/674 (2%) Strand=Plus/Minus Query 14 GCCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72 ||| |||| ||| |||||||||||||||||||||| |||||||||||| |||| ||||| Sbjct 1885 GCCAAGCCTATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATG 1826 Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1825 GGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 1766 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 |||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| Sbjct 1765 GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAG 1706 Query 193 GGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCAC 251 |||||||| | |||||||||| | | || ||| || || ||| || ||||||| Sbjct 1705 GGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTC-GCTGGTGCAC 1647 Query 252 TCTTCTGCGGTCAGGCCAGCATCAGCTCGG-GCGGTCGGATAAAGGCCCCGGGAATGTGG 310 | | | | | |||||||||||||| | || |||| |||||||||| ||||||||||| Sbjct 1646 TTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGG-GGGATAAAGGCTTCGGGAATGTGG 1588 Query 311 CCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGC 370 | |||| ||| ||||||||||||| ||| ||| | |||| |||||||||| ||| Sbjct 1587 CTCCCT--CGGGAGTGTTATAGCCCGTTGTGTAATACCCTGCGCC-GGACTGAGGTACGC 1531 Query 371 GCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAG 430 ||||| || ||||||||||||||||||| | |||| ||||||||| ||||||||||||| Sbjct 1530 GCTCC-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAG 1472 Query 431 GAGTCTAACATC-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAAC 489 ||||| | || |||||||||||| |||||| |||||| | |||||||||||||||||| Sbjct 1471 GAGTC-GTCTTCGTATGCGAGTGTTCGGGTGTAAAACCCCTACGCGTAATGAAAGTGAAC 1413 Query 490 GGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTG 549 | ||||| || | || ||| ||||||||||||||||||| ||||||||||||| Sbjct 1412 GCAGGTGAGA----GCTTCGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGATTTG 1357 Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 |||||||||||| | |||||||||||| ||||||||||||||| |||||||||||| Sbjct 1356 AGTAAGAGCATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGC 1297 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1296 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT 1237 Query 670 GGGTATAGGGGCGA 683 |||||||||||||| Sbjct 1236 GGGTATAGGGGCGA 1223 >seq16573 Length=715 Score = 708 bits (784), Expect = 0.0 Identities = 524/603 (87%), Gaps = 9/603 (1%) Strand=Plus/Plus Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 120 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCAT 179 Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 180 CTAAAGCTAAATACTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 239 Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 240 AGCACTTTGAAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGAC 299 Query 208 CAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGT-CAGG 266 |||||| ||| ||| | || |||| | | ||||| |||| | ||| | |||| Sbjct 300 CAGACTCGCCTCCAGG-GTTCCGCCGGTCTTCTGACCGGTCTACTCGCC-GCGTTGCAGG 357 Query 267 CCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTG 326 |||||||| || | || | |||||| | | ||||||| || |||| ||| ||| Sbjct 358 CCAGCATCGTCTGGTGCCGCTGGATAA-GACTTGAGGAATGTAGCTCCCTC--GGGAGTG 414 Query 327 TTATAGCCCGGGGTGGAATGCGGCCCGC-CTGGACTGAGGTCCGCGCTCCGGCTAGGATG 385 |||||||| ||| |||| || || | ||||||||| ||||||| |||| ||| | Sbjct 415 TTATAGCCTCTTGTG--ATGCAGCGAGCGCCGGACTGAGGACCGCGCTTCGGCACGGACG 472 Query 386 CTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTAT 445 ||||| ||||||| |||| || ||||||||| ||||||||||||||||||||||||||| Sbjct 473 CTGGCATAATGGTCGTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTAC 532 Query 446 GCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGT 505 ||||||||| ||||||||||||||| |||| | |||||| |||||||||||||| ||| | Sbjct 533 GCGAGTGTTCGGGTGTCAAACCCGTACGCGCAGTGAAAGCGAACGGAGGTGGGAGCCCAT 592 Query 506 GAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTG 565 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 593 AAGGGCGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCGTAGATG 652 Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 712 Query 626 GGA 628 ||| Sbjct 713 GGA 715 >seq18430 Length=242 Score = 197 bits (218), Expect = 6e-48 Identities = 150/176 (85%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||||||||||||||||||| || |||| |||||||| | ||||| ||||||| Sbjct 65 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAAT 124 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || ||||||||||||| ||||||| |||| ||||||||||||| ||||||||| Sbjct 125 ATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAA 184 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTG 215 |||||||| || || ||||||||||||| |||||||| | |||| | ||||||| Sbjct 185 AGAGAGTT-AACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTG 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079565465900