Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq18676 127 5e-27 seq18652 86.0 2e-14 >seq18676 Length=1010 Score = 127 bits (140), Expect = 5e-27 Identities = 193/271 (71%), Gaps = 8/271 (3%) Strand=Plus/Minus Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74 |||| ||| || ||| ||||||||||||| | | |||||||| |||||||| Sbjct 1009 ATCTGCACTGCTATTCCAATTTCACTGAGACAATCATCGAGACAGCTGTTGTATCGTTAC 950 Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATT 134 |||||| |||| | | | | ||| | | ||||| ||||||||||||||||||| | | Sbjct 949 ACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGACCCTCA-C 891 Query 135 GTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGT----TAGCTAACCCCA 190 |||| ||||||| || ||||||| ||| || | | | || || ||| | Sbjct 890 GTTAAGGCCGCCTTTAACCGGGGTTTCCGTCGACATCAAATAGTATTATATTTAATTCTC 831 Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA-CTTTCGTGTTT- 248 || |||||| |||||||||||||| |||||| ||||| | | ||| | ||| Sbjct 830 TCTGTTAACCAGCCGGCACCGGGCAGATATCACACTTTATACATAGATTTTTAATCTTTC 771 Query 249 -GCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 ||| ||||||||||||| | |||||||||| Sbjct 770 AGCAAAGTGCTGTGTTTTAATTAAACAGTCG 740 >seq18652 Length=390 Score = 86.0 bits (94), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 10/212 (5%) Strand=Plus/Minus Query 77 CATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGT 136 ||||| |||||| | | | ||| | | ||||| ||||||||||||||||||| | || | Sbjct 388 CATTCATGCAGGACCGCATTTAACGGCCAAGGTATTTCGCTACCTTAGGACCCTCATAGG 329 Query 137 TACGGCCGCCGTTTACCGGGGCTTCGATCAA----GAGCTT---CGCGTTAGCTAACCCC 189 || ||||||| || | ||||| ||| |||| ||||| || | || | Sbjct 328 TAAGGCCGCCATTGATCGGGGTTTCCTTCAAAACCTAGCTTATATTAGTCAACTTAGTAA 269 Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT-TCGTGT-- 246 ||| |||||| ||| || ||||||| |||||| | |||| | | || | | | Sbjct 268 ATCCGTTAACCGGCCGACATCGGGCAGAATTCACACTCAATACTTTGATTTATTATCTTA 209 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 |||| |||||| |||||| | |||||||||| Sbjct 208 TTGCGAAGTGCTTTGTTTTAATTAAACAGTCG 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260544587136