Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq18166 113 1e-22 seq18629 93.3 1e-16 seq19203 86.0 2e-14 >seq18166 Length=970 Score = 113 bits (124), Expect = 1e-22 Identities = 145/198 (73%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 295 GGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGA 354 |||||| | | ||| |||||||| || | || | ||||||| | |||||| ||| | Sbjct 559 GGGGACTAAGACAAGTCATCATGGCCTTAATATTGTGGGCTATAGACGTGCCACATATGC 618 Query 355 CAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGT-TCTCAGTT 413 | | |||||| | |||||| | || || ||| |||| |||||| | | | | | || Sbjct 619 CTAAACAAAGAGATGCGAAAATGTGAATTCTAGCTAATCTCATAAAATAGGATATAAATT 678 Query 414 C---GGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATC 470 ||||||||||||| || ||||||||||||| | ||| ||||||||||| ||| Sbjct 679 TTAAGGATTGTAGTCTGAAATTCGACTATATGAATAAGTAATTACTAGTAATCGTGAATC 738 Query 471 AGCATGCTACGGTGAATA 488 |||||| |||||||||| Sbjct 739 AGCATGTCACGGTGAATA 756 >seq18629 Length=555 Score = 93.3 bits (102), Expect = 1e-16 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365 ||| |||||||| || | || | ||||||| | |||||| ||| | |||||| | Sbjct 140 CAAGTCATCATGGCCTTAATATTGTGGGCTATAGACGTGCCACATATGTTTGTACAAAAG 199 Query 366 GCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTC 425 | |||||| | || | ||| |||||| ||| | | | | | | ||||||||||| Sbjct 200 GATGCGAAAGTGTGAACTTTAGCTAATCCCCAAAATTGGATATAATAT-GGATTGTAGTC 258 Query 426 TGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCAT-GCTACGGTG 484 || |||||||||| ||||| ||||| ||||||||||| |||| ||| | |||||| Sbjct 259 TGTAACTCGACTACATGAATAAGGAATTACTAGTAATCGTGAATCACCATCGTCACGGTG 318 Query 485 AAT 487 ||| Sbjct 319 AAT 321 >seq19203 Length=661 Score = 86.0 bits (94), Expect = 2e-14 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365 ||| |||||||| ||| ||| | ||||| | | |||||| ||| | ||||||| Sbjct 97 CAAGTCATCATGGCCCAAATGGTGTGGGCGATAGACGTGCCACATATTCCTATACAAAAT 156 Query 366 GCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTC 425 | |||| | |||| | ||| |||| ||||||| | | ||||||||||| Sbjct 157 GATGCGATAATGCGAATTTGAGCTAATCTAATAAAGTAGGATATAACAAGGATTGTAGTC 216 Query 426 TGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGA 485 || |||||||||||||||| ||||| ||||||||||| || || | | |||||| Sbjct 217 TGAAACTCGACTATATGAATAAGGAATTACTAGTAATCGTGAATAAGAACGTCACGGTGG 276 Query 486 AT 487 || Sbjct 277 AT 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503695319680