Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq18017 275 1e-71 seq16575 226 5e-57 seq8786 221 2e-55 seq6869 208 1e-51 seq4649 187 4e-45 seq16574 185 1e-44 seq18084 156 7e-36 >seq18017 Length=565 Score = 275 bits (304), Expect = 1e-71 Identities = 163/169 (96%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||| | |||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 398 TACTAAACTGAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 456 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 457 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 516 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 517 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 565 >seq16575 Length=582 Score = 226 bits (250), Expect = 5e-57 Identities = 125/125 (100%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 582 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 523 Query 231 CCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTA 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 522 CCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTA 463 Query 291 TTCAC 295 ||||| Sbjct 462 TTCAC 458 >seq8786 Length=14415 Score = 221 bits (244), Expect = 2e-55 Identities = 205/264 (78%), Gaps = 21/264 (8%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||| | ||| ||||||| || ||||||||||| ||||| ||||| || Sbjct 4071 CATCAGTAGGGTAAACCCAACTTGTCTCACAACAGTCTAAACCCACCTCACTTTCCCCAT 4130 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 | ||||||||||||||| | || || |||||||||| || |||||| |||||| ||| Sbjct 4131 TGGTGGGTGAACAATCCTGCACTGGCCAAATTCTGCTTTGGCATGATAAGAAGAGTTGAC 4190 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || |||| | |||||||||| || |||||||| |||||||||||||||||||||||||| Sbjct 4191 ATTGAAGCACCAAAAAGCAATGTTGCTATGAATGCTTGGCTGCCACAAGCCAGTTATCCA 4250 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 | |||||| |||||| | |||| ||||| | |||||| Sbjct 4251 T--------------------TCTAGCTCTAAATTTTAAAAGACT-AAGGACCAATAGGC 4289 Query 272 CACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||| ||||||| Sbjct 4290 CACACTTTCATGGTTTTTATTCAC 4313 >seq6869 Length=646 Score = 208 bits (230), Expect = 1e-51 Identities = 115/115 (100%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 547 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 488 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 203 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 487 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 433 >seq4649 Length=16124 Score = 187 bits (206), Expect = 4e-45 Identities = 134/152 (88%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 ||||||| ||||| || ||||||||||||| || |||||| | |||| ||||||| |||| Sbjct 3276 AAGAGCCAACATCAAAAGATCAAAAAGCAATGTTGCTATGGATGCTTTGCTGCCAAAAGC 3217 Query 202 CAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAG-GGACTAAAG 260 ||||||||||||| ||||||||||||| ||||||||| ||||||| | || ||||| ||| Sbjct 3216 CAGTTATCCCTGTAGTAACTTTTCTGGTACCTCTAGCTTCAAATT-CTAGAGGACTCAAG 3158 Query 261 GATCGATAGGCCACACTTTCATGGTTTGTATT 292 ||| ||||||||||||||||||||||| |||| Sbjct 3157 GATTGATAGGCCACACTTTCATGGTTTATATT 3126 >seq16574 Length=535 Score = 185 bits (204), Expect = 1e-44 Identities = 114/122 (93%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||| |||||||| ||| |||||| |||||||||||||||||||||||||||||| Sbjct 122 TACTAAATTGAATTACCGTTGCGGCGACCTTCATCAGTAGGGTAAAACTAACCTGTCTCA 63 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 3 Query 121 AT 122 || Sbjct 2 AT 1 >seq18084 Length=261 Score = 156 bits (172), Expect = 7e-36 Identities = 88/89 (99%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 173 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 232 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||| Sbjct 233 TAGTGGGTGAACAATCCAACGCTTACCGA 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854226915648