Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq16572 297 2e-78 seq6851 159 4e-37 >seq16572 Length=643 Score = 297 bits (328), Expect = 2e-78 Identities = 181/191 (95%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 209 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATA 268 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 269 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 327 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 328 CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 387 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 388 TTGGATTTATT 398 >seq6851 Length=6801 Score = 159 bits (176), Expect = 4e-37 Identities = 147/190 (77%), Gaps = 21/190 (11%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 1471 GGAACCAGGATTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC------------- 1517 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||||||||| ||||||||||| | ||||||||||| ||||||||||| Sbjct 1518 -------ATGGAATAATAAAATAGGACGTGTGATTCTATTTTGTTGGTTTCTAGGA-TTA 1569 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| || ||| ||||| | ||||| ||||||| ||||||||||| Sbjct 1570 CCGTAATGATGAATAGGGTCAGTTGGGGGCATTTGTATTACATTGTCAGAGGTGAAATTC 1629 Query 181 TTGGATTTAT 190 ||||||| || Sbjct 1630 TTGGATTGAT 1639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511899520320