Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq6851 351 2e-94 seq9308 150 3e-34 >seq6851 Length=6801 Score = 351 bits (388), Expect = 2e-94 Identities = 261/304 (86%), Gaps = 1/304 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||| |||||||||||| | || ||| ||| || || | |||||||| Sbjct 2041 GAACGAGACCTTCTCCTGCTAAATAGTCCAGCTGGCTACGGCTGGCTGCTGACTTCTTAG 2100 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 |||||||||| | | || |||||||||| |||||||||||||||||||||||||||| Sbjct 2101 AGGGACTATCAACGTTTAGTTGATGGAAGTTGGAGGCAATAACAGGTCTGTGATGCCCTT 2160 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| | Sbjct 2161 AGATGTTCTGGGCCGCACGCGCGCTACACTGACCAAGCCAGCGAGTATATCACCTTATCT 2220 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | || | ||||||||||||| ||||| |||||| |||||||||||||||||||||||| Sbjct 2221 GAAAAGATTGGGTAATCTTGTGAAACTTGGTCGTGATGGGGATAGAGCATTGCAATTATT 2280 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 2281 GCTCTTCAACGAGGAATACCTAGTAAGCGTATGTCATCAGCATGCGTTGATTACGTCCCT 2340 Query 319 GCCC 322 |||| Sbjct 2341 GCCC 2344 >seq9308 Length=10155 Score = 150 bits (166), Expect = 3e-34 Identities = 89/93 (96%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 236 GGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCAT 295 |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 6464 GGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATACCTAGTAAGCGTATGTCAT 6405 Query 296 CAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||||||||||||||||||||||||||| Sbjct 6404 CAGCATGCGTTGATTACGTCCCTGCCCTTTGTA 6372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947008116224