Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq16575 659 0.0 seq8786 585 9e-165 >seq16575 Length=582 Score = 659 bits (730), Expect = 0.0 Identities = 406/430 (94%), Gaps = 5/430 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 426 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 367 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 366 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 307 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| Sbjct 306 AGCCCGCGAAGGACCTTAACGCCAGAAGATGGGCGGTGAAGCCCAGTTCCGCTTCATTGA 247 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 |||||||||||||||||| ||||||||||||||||| |||||| | |||||||| || Sbjct 246 ATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACTGGCGCCGGA---GCTCCCACCTA 190 Query 247 TTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||||||| ||||| | ||| |||||||| ||| |||||||||||||||||||||||||| Sbjct 189 TTCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 131 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 CTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 71 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 70 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 11 Query 426 TTGGCTACCT 435 |||||||||| Sbjct 10 TTGGCTACCT 1 >seq8786 Length=14415 Score = 585 bits (648), Expect = 9e-165 Identities = 461/551 (84%), Gaps = 31/551 (6%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTT-------AGGACACCTG 59 |||||| |||| || ||||| |||||| |||||| |||||| |||||| ||| Sbjct 4345 CTTTTGGCCTACTTGATATTTCCGTTCTCAATGAGTGCCCCTTGGGCCTTAGGACATCTG 4404 Query 60 CGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAAC 119 | |||| ||| ||||||| ||| ||||||||||||||||||||||||||| || Sbjct 4405 CCTTATT-TTTCACAGATGCGCCACCCCAGCCAAACTCCCCACCTGACAATCTC------ 4457 Query 120 CCGGATCGGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCT 179 | |||| ||||||||||| | | ||| ||| || || |||| || ||| Sbjct 4458 ------CAGCCCCAAAAGGACCTTAATACTAAAAAGTGGGATGTTAATCCCAGCTCTGCT 4511 Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 ||||||| |||||||||| || |||| ||||||||||||||||| |||| | |||| Sbjct 4512 TCATTGAATAAGTAAAAAGACAATAAAGGTAGTGGTATTTCACTGGCGCTTAC---GCTC 4568 Query 240 CCACTTATTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 |||||||||||||||| ||| | ||| |||||||| ||| || ||||||||||||||| Sbjct 4569 CCACTTATTCTACACC-CTCTATGTCTTTTCACAATGTCAAACCTGAGTCAAGCTCAACA 4627 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG------ 352 | ||||||||||||| |||||| |||||||| ||| |||||||||| ||||| Sbjct 4628 GTGTCTTCTTTCCCCACTGATTTTGCCAAGCCTGTTGTCTTGGCTGTGATTTCGGTTTTG 4687 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 4688 CTAGATAGTAGATAGGGACAGTGAGAATCTTGTTAATCCATTCATGCGCGTCACTAATTA 4747 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4748 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 4807 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 4808 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAAC 4867 Query 533 ATCACTTTCTG 543 | ||||||||| Sbjct 4868 ACCACTTTCTG 4878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634868741184