Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01]
20,258 sequences; 69,592,563 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq16575 659 0.0
seq8786 585 9e-165
>seq16575
Length=582
Score = 659 bits (730), Expect = 0.0
Identities = 406/430 (94%), Gaps = 5/430 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 367
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 366 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 307
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||
Sbjct 306 AGCCCGCGAAGGACCTTAACGCCAGAAGATGGGCGGTGAAGCCCAGTTCCGCTTCATTGA 247
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
|||||||||||||||||| ||||||||||||||||| |||||| | |||||||| ||
Sbjct 246 ATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACTGGCGCCGGA---GCTCCCACCTA 190
Query 247 TTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305
||||||| ||||| | ||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 189 TTCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 131
Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 CTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 71
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 11
Query 426 TTGGCTACCT 435
||||||||||
Sbjct 10 TTGGCTACCT 1
>seq8786
Length=14415
Score = 585 bits (648), Expect = 9e-165
Identities = 461/551 (84%), Gaps = 31/551 (6%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTT-------AGGACACCTG 59
|||||| |||| || ||||| |||||| |||||| |||||| |||||| |||
Sbjct 4345 CTTTTGGCCTACTTGATATTTCCGTTCTCAATGAGTGCCCCTTGGGCCTTAGGACATCTG 4404
Query 60 CGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAAC 119
| |||| ||| ||||||| ||| ||||||||||||||||||||||||||| ||
Sbjct 4405 CCTTATT-TTTCACAGATGCGCCACCCCAGCCAAACTCCCCACCTGACAATCTC------ 4457
Query 120 CCGGATCGGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCT 179
| |||| ||||||||||| | | ||| ||| || || |||| || |||
Sbjct 4458 ------CAGCCCCAAAAGGACCTTAATACTAAAAAGTGGGATGTTAATCCCAGCTCTGCT 4511
Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239
||||||| |||||||||| || |||| ||||||||||||||||| |||| | ||||
Sbjct 4512 TCATTGAATAAGTAAAAAGACAATAAAGGTAGTGGTATTTCACTGGCGCTTAC---GCTC 4568
Query 240 CCACTTATTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298
|||||||||||||||| ||| | ||| |||||||| ||| || |||||||||||||||
Sbjct 4569 CCACTTATTCTACACC-CTCTATGTCTTTTCACAATGTCAAACCTGAGTCAAGCTCAACA 4627
Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG------ 352
| ||||||||||||| |||||| |||||||| ||| |||||||||| |||||
Sbjct 4628 GTGTCTTCTTTCCCCACTGATTTTGCCAAGCCTGTTGTCTTGGCTGTGATTTCGGTTTTG 4687
Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 4688 CTAGATAGTAGATAGGGACAGTGAGAATCTTGTTAATCCATTCATGCGCGTCACTAATTA 4747
Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4748 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 4807
Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 4808 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAAC 4867
Query 533 ATCACTTTCTG 543
| |||||||||
Sbjct 4868 ACCACTTTCTG 4878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634868741184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |