Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01]
20,258 sequences; 69,592,563 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq16574 279 8e-73
seq18017 217 2e-54
seq18084 123 4e-26
>seq16574
Length=535
Score = 279 bits (308), Expect = 8e-73
Identities = 233/279 (84%), Gaps = 5/279 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct 120 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 177
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||| | ||||||| ||||||||||||||||| |||||||||||||
Sbjct 178 GCCGCGAAGCTACCATCCGTCGGATTATAGCTGAACGCCTCTAAGTTAGAATCCATGCCA 237
Query 121 GAACGGGGTGATTCTCT-CCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179
|||||||| |||| ||| || |||| ||||| |||||||||||||||||||||||| |
Sbjct 238 GAACGGGGCGATTTTCTCCCAGCACGTCGTACGAGGATACGAATAGGCTTCGGCCCCGGA 297
Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239
|||||||||||| ||| || || |||| || | | | | || ||||| ||
Sbjct 298 CCTTAGCAGGCC-ATAACTCCTCTCTCGTAGAAGTCGGGAGAGGT-AATTGCCGGATAGC 355
Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||||| || |||| ||||| |||||||||||||||||
Sbjct 356 AATTTGACAGCGCGCTGGGATGAATCCTTTGCAGACGAC 394
>seq18017
Length=565
Score = 217 bits (240), Expect = 2e-54
Identities = 223/283 (79%), Gaps = 15/283 (5%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| | || |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 400 GTACGAGAGGAACAACTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 343
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 342 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 283
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| |||||| | | || |||| | || ||| | |||||||||||||| |
Sbjct 282 GAACGCGGTGATAC-CACCCGCACGT-ACAGATGGACAAGAATAGGCTTCGGCTTAGCGT 225
Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGG-GGCGCTCAGCTGGCGGA 235
|| ||||||| | | |||| || |||||| | || | | | | | ||| |
Sbjct 224 CTCAGCAGGCGATTCCTCCACGG-----CCACGGAAGAGTGGTTGTGGT-ATTTCGCGTA 171
Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||| ||||||| || | || ||| ||||||||||||||||||
Sbjct 170 TTGTAATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 128
>seq18084
Length=261
Score = 123 bits (136), Expect = 4e-26
Identities = 103/123 (84%), Gaps = 5/123 (4%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| | ||| |||||||| |||||| ||||| || | |||| |
Sbjct 143 GTACGAGAGGAACCGTTCA-TTCG---TAATTGGTATTTGCGCCTGTCCGATCGGGCAAT 88
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||| || ||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 87 GGCGCGAAGCTATCA-CTGCTGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 29
Query 121 GAA 123
|||
Sbjct 28 GAA 26
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819039232512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |