Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq16574 279 8e-73 seq18017 217 2e-54 seq18084 123 4e-26 >seq16574 Length=535 Score = 279 bits (308), Expect = 8e-73 Identities = 233/279 (84%), Gaps = 5/279 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct 120 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 177 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||| | ||||||| ||||||||||||||||| ||||||||||||| Sbjct 178 GCCGCGAAGCTACCATCCGTCGGATTATAGCTGAACGCCTCTAAGTTAGAATCCATGCCA 237 Query 121 GAACGGGGTGATTCTCT-CCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179 |||||||| |||| ||| || |||| ||||| |||||||||||||||||||||||| | Sbjct 238 GAACGGGGCGATTTTCTCCCAGCACGTCGTACGAGGATACGAATAGGCTTCGGCCCCGGA 297 Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 |||||||||||| ||| || || |||| || | | | | || ||||| || Sbjct 298 CCTTAGCAGGCC-ATAACTCCTCTCTCGTAGAAGTCGGGAGAGGT-AATTGCCGGATAGC 355 Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||| || |||| ||||| ||||||||||||||||| Sbjct 356 AATTTGACAGCGCGCTGGGATGAATCCTTTGCAGACGAC 394 >seq18017 Length=565 Score = 217 bits (240), Expect = 2e-54 Identities = 223/283 (79%), Gaps = 15/283 (5%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 400 GTACGAGAGGAACAACTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 343 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 342 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 283 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | | || |||| | || ||| | |||||||||||||| | Sbjct 282 GAACGCGGTGATAC-CACCCGCACGT-ACAGATGGACAAGAATAGGCTTCGGCTTAGCGT 225 Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGG-GGCGCTCAGCTGGCGGA 235 || ||||||| | | |||| || |||||| | || | | | | | ||| | Sbjct 224 CTCAGCAGGCGATTCCTCCACGG-----CCACGGAAGAGTGGTTGTGGT-ATTTCGCGTA 171 Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||| ||||||| || | || ||| |||||||||||||||||| Sbjct 170 TTGTAATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 128 >seq18084 Length=261 Score = 123 bits (136), Expect = 4e-26 Identities = 103/123 (84%), Gaps = 5/123 (4%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | ||| |||||||| |||||| ||||| || | |||| | Sbjct 143 GTACGAGAGGAACCGTTCA-TTCG---TAATTGGTATTTGCGCCTGTCCGATCGGGCAAT 88 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| || ||||||||||||||||||||||||||||| |||||||| ||| | Sbjct 87 GGCGCGAAGCTATCA-CTGCTGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 29 Query 121 GAA 123 ||| Sbjct 28 GAA 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819039232512