Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq18016 755 0.0 seq6851 686 0.0 seq7511 372 9e-101 >seq18016 Length=780 Score = 755 bits (836), Expect = 0.0 Identities = 472/504 (94%), Gaps = 3/504 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 95 GTACTCATTCCAATTACGAGACCCAAAAGAGCCCCGTATCAGTATTTATTGTCACTACCT 154 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 155 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 214 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||| |||||| | ||||||||||||| |||||| | Sbjct 215 TCTCAGGCTCCCTCTCCGGAATCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 274 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| || || | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 275 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 334 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||| ||||||||| ||||||| |||||||||||| |||||| | ||||| ||||| Sbjct 335 CAAGGCCGTGCGATTCGAGAAGTTATCATGAATCACCAAAGAGCCCAG-AGGGCATTGGT 393 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 394 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 453 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 454 AATTACCACGG-TATCCATGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 512 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 513 GCCATTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 571 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 572 AGACAAGCATATGACTACTGGCAG 595 >seq6851 Length=6801 Score = 686 bits (760), Expect = 0.0 Identities = 459/506 (91%), Gaps = 4/506 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||| |||||||||||||||| | || |||||||||||||||||| Sbjct 1256 GTACTCATTCCAATTGTAAGACCCAAAAGAGCCATACATTGTTATTTATTGTCACTACCT 1197 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||||||||||||||||||||||||||||||| ||||| ||| || |||||| Sbjct 1196 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCAATCCTTAGATTTGAGGGCCGTT 1137 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||| | ||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 1136 TCTCAGGCCCTCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTCATCACCATGGTA 1077 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| Sbjct 1076 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCACCGGCA 1017 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| |||||||||||| |||||| | | |||||||| | |||| Sbjct 1016 CAAGGCCATGCGATTCGAGAAGTTATTATGAGTCACCAGGAGGACCCGAAGGCCATTGG- 958 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAA-GTCGGGG-TTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||||||||||| || ||||||| |||| |||||||||||||||| Sbjct 957 TTTTTATCTAATAAATACACCCCTTCCAAAGGTCGGGGCTTTTCAGCATGTATTAGCTCT 898 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 897 AGAATTACCACAGTTATCCATGTAGTAAGGTATCATCAAATAAACTATAACTGATTTAAT 838 Query 419 GAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 837 GAGCCATTCGCAGTTTCACTGTATAG-TTGTTTATACTTAGACATGCATGGCTTAATCTT 779 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||| Sbjct 778 TGAGACAAGCATATGACTACTGGCAG 753 >seq7511 Length=1762 Score = 372 bits (412), Expect = 9e-101 Identities = 298/355 (84%), Gaps = 3/355 (1%) Strand=Plus/Plus Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 ||| ||| || |||||||||||||| | |||||||||||| |||||| |||| | ||| Sbjct 230 CTTAGATTTGAGGGCCGTTTCTCAGGCCCTCTCTCCGGAATCAAACCCTTATTCTCTGTT 289 Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221 || || ||||||||||||| ||||||||||||| ||||||||||||||||| |||| Sbjct 290 GCCTGTCATCACCATGGTAGGCCTCTATCCTACCATCAAAAGTTGATAGGGCAGATATTT 349 Query 222 GAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG 281 ||||||| |||| ||||| |||||||||| |||| | |||| ||||||| |||||| | Sbjct 350 GAATGAAGCATCACCGGCACAAGGCCATGTGATTTGACAAGTCATTATGAGTCACCAGGA 409 Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAA-GTC-GGGGTT 339 | ||| |||| | |||||||| ||||| || |||||||||||| | || ||| ||| || Sbjct 410 GGACCCAAAGGCCATTGGTTTTATATCTGATGAATACACCCCTTTCAAAGGTCAGGGCTT 469 Query 340 TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAAT 399 || ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 470 TTCAGCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGTAAGGTATCATCAAAT 529 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 ||| | ||||||||| |||||||||| |||||||||||||||| ||| | ||| Sbjct 530 CAACTACAACTGATTTGTTGAGCCATTCACAGTTTCACTGTATAG-TTGTTCATA 583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510094023168