Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01]
20,258 sequences; 69,592,563 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq18016 755 0.0
seq6851 686 0.0
seq7511 372 9e-101
>seq18016
Length=780
Score = 755 bits (836), Expect = 0.0
Identities = 472/504 (94%), Gaps = 3/504 (1%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 95 GTACTCATTCCAATTACGAGACCCAAAAGAGCCCCGTATCAGTATTTATTGTCACTACCT 154
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 214
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||||||||||||||||| |||||| | ||||||||||||| |||||| |
Sbjct 215 TCTCAGGCTCCCTCTCCGGAATCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 274
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||||| || || | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 275 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 334
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||| ||||||||| ||||||| |||||||||||| |||||| | ||||| |||||
Sbjct 335 CAAGGCCGTGCGATTCGAGAAGTTATCATGAATCACCAAAGAGCCCAG-AGGGCATTGGT 393
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 394 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 453
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 454 AATTACCACGG-TATCCATGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 512
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 513 GCCATTCGCAGTTTCGCTGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 571
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 572 AGACAAGCATATGACTACTGGCAG 595
>seq6851
Length=6801
Score = 686 bits (760), Expect = 0.0
Identities = 459/506 (91%), Gaps = 4/506 (1%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||| |||||||||||||||| | || ||||||||||||||||||
Sbjct 1256 GTACTCATTCCAATTGTAAGACCCAAAAGAGCCATACATTGTTATTTATTGTCACTACCT 1197
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||||||||||||||||||||||||||||||| ||||| ||| || ||||||
Sbjct 1196 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCAATCCTTAGATTTGAGGGCCGTT 1137
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||| | ||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1136 TCTCAGGCCCTCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTCATCACCATGGTA 1077
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||| ||||||||||||||||||||||||||||||| ||||||||||| |||| |||||
Sbjct 1076 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCACCGGCA 1017
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||||||||||||| |||||||||||| |||||| | | |||||||| | ||||
Sbjct 1016 CAAGGCCATGCGATTCGAGAAGTTATTATGAGTCACCAGGAGGACCCGAAGGCCATTGG- 958
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAA-GTCGGGG-TTTTTAGCATGTATTAGCTCT 358
||||||||||||||||||||||||||| || ||||||| |||| ||||||||||||||||
Sbjct 957 TTTTTATCTAATAAATACACCCCTTCCAAAGGTCGGGGCTTTTCAGCATGTATTAGCTCT 898
Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418
||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 897 AGAATTACCACAGTTATCCATGTAGTAAGGTATCATCAAATAAACTATAACTGATTTAAT 838
Query 419 GAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 837 GAGCCATTCGCAGTTTCACTGTATAG-TTGTTTATACTTAGACATGCATGGCTTAATCTT 779
Query 479 TGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||
Sbjct 778 TGAGACAAGCATATGACTACTGGCAG 753
>seq7511
Length=1762
Score = 372 bits (412), Expect = 9e-101
Identities = 298/355 (84%), Gaps = 3/355 (1%)
Strand=Plus/Plus
Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161
||| ||| || |||||||||||||| | |||||||||||| |||||| |||| | |||
Sbjct 230 CTTAGATTTGAGGGCCGTTTCTCAGGCCCTCTCTCCGGAATCAAACCCTTATTCTCTGTT 289
Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221
|| || ||||||||||||| ||||||||||||| ||||||||||||||||| ||||
Sbjct 290 GCCTGTCATCACCATGGTAGGCCTCTATCCTACCATCAAAAGTTGATAGGGCAGATATTT 349
Query 222 GAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG 281
||||||| |||| ||||| |||||||||| |||| | |||| ||||||| |||||| |
Sbjct 350 GAATGAAGCATCACCGGCACAAGGCCATGTGATTTGACAAGTCATTATGAGTCACCAGGA 409
Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAA-GTC-GGGGTT 339
| ||| |||| | |||||||| ||||| || |||||||||||| | || ||| ||| ||
Sbjct 410 GGACCCAAAGGCCATTGGTTTTATATCTGATGAATACACCCCTTTCAAAGGTCAGGGCTT 469
Query 340 TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAAT 399
|| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 470 TTCAGCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGTAAGGTATCATCAAAT 529
Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454
||| | ||||||||| |||||||||| |||||||||||||||| ||| | |||
Sbjct 530 CAACTACAACTGATTTGTTGAGCCATTCACAGTTTCACTGTATAG-TTGTTCATA 583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510094023168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |