Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq19 100 2e-16 seq8938 93.3 3e-14 >seq19 Length=17389 Score = 100 bits (110), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 61108 GCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGG 61167 || ||||||||||| ||||| | ||||| ||||| |||| || || ||| | |||||| Sbjct 11725 GCCGAAGCTTCCTTTTGGACAGCCGAGGAAATCGATCTGTCGAAGGATATGCACGACTGG 11784 Query 61168 GAGCGTTTATCGA---GCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCC 61224 || | | || | | || |||| ||||| |||||||| | || |||||||| Sbjct 11785 GATAATAAGTTGAATGGGGACGAGAAACACTTCATCAAACATGTCCTCGCTTTCTTTGCT 11844 Query 61225 GCTTCGGACGGTATCGTCAATGAGAA-TTTATTGGAACGTTTCGCGCAGGAGGTGCAAGT 61283 || || || || |||||||| ||||| | || | | |||| | | | || || ||| | Sbjct 11845 GCCTCCGATGGGATCGTCAACGAGAACCTCATCGAGAGGTTTAGTGGA-GAAGTTCAAAT 11903 Query 61284 GTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316 | || || || ||||||||||||||||| || Sbjct 11904 CGCTGAAGCTCGATGTTTCTACGGCTTCCAAAT 11936 >seq8938 Length=53458 Score = 93.3 bits (102), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 65807 AAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGT 65866 |||| ||| || || ||||| ||||| ||||| || |||||||| | || || || Sbjct 24586 AAAGCGTCAGCAAGTCCTTGTACTCCGATACCAATCGGACGATGTCTCATGTTCGACTTC 24527 Query 65867 CTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTG 65917 |||||||| || | |||||||||||||| |||||||| ||||||| |||| Sbjct 24526 CTCGCCTCTGGGATCGGGTAGTAATTGATGTCGATAATTCGATTCAGATTG 24476 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388 || || ||| ||| || |||||||| ||||| || ||||| || | || || ||||| Sbjct 23940 TCAACTCGAGACATGAAGAGATCAGGAATCCATAGCGCGTAAAACAAGTCCCGAGCTCGA 23881 Query 66389 TGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT 66448 || || | || |||||||| |||||||| | | || || | ||| || |||||| Sbjct 23880 CTTTCTTCCTTCCCATGATTTTTCCGCAAGTCCAACCAGTCGAACACGTCCGCGTGCCAT 23821 Query 66449 GGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504 || ||||||||||| || || | || | ||| ||| ||||| ||||| || Sbjct 23820 GGCTCCAGGTAGATTGCAAAGGCCCCGGGTCTCTTGTTGCCTCCTTGATCGACATA 23765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397469842697120