Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01]
20,258 sequences; 69,592,563 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq19 100 2e-16
seq8938 93.3 3e-14
>seq19
Length=17389
Score = 100 bits (110), Expect = 2e-16
Identities = 152/213 (71%), Gaps = 5/213 (2%)
Strand=Plus/Plus
Query 61108 GCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGG 61167
|| ||||||||||| ||||| | ||||| ||||| |||| || || ||| | ||||||
Sbjct 11725 GCCGAAGCTTCCTTTTGGACAGCCGAGGAAATCGATCTGTCGAAGGATATGCACGACTGG 11784
Query 61168 GAGCGTTTATCGA---GCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCC 61224
|| | | || | | || |||| ||||| |||||||| | || ||||||||
Sbjct 11785 GATAATAAGTTGAATGGGGACGAGAAACACTTCATCAAACATGTCCTCGCTTTCTTTGCT 11844
Query 61225 GCTTCGGACGGTATCGTCAATGAGAA-TTTATTGGAACGTTTCGCGCAGGAGGTGCAAGT 61283
|| || || || |||||||| ||||| | || | | |||| | | | || || ||| |
Sbjct 11845 GCCTCCGATGGGATCGTCAACGAGAACCTCATCGAGAGGTTTAGTGGA-GAAGTTCAAAT 11903
Query 61284 GTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316
| || || || ||||||||||||||||| ||
Sbjct 11904 CGCTGAAGCTCGATGTTTCTACGGCTTCCAAAT 11936
>seq8938
Length=53458
Score = 93.3 bits (102), Expect = 3e-14
Identities = 87/111 (78%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 65807 AAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGT 65866
|||| ||| || || ||||| ||||| ||||| || |||||||| | || || ||
Sbjct 24586 AAAGCGTCAGCAAGTCCTTGTACTCCGATACCAATCGGACGATGTCTCATGTTCGACTTC 24527
Query 65867 CTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTG 65917
|||||||| || | |||||||||||||| |||||||| ||||||| ||||
Sbjct 24526 CTCGCCTCTGGGATCGGGTAGTAATTGATGTCGATAATTCGATTCAGATTG 24476
Score = 84.2 bits (92), Expect = 2e-11
Identities = 124/176 (70%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388
|| || ||| ||| || |||||||| ||||| || ||||| || | || || |||||
Sbjct 23940 TCAACTCGAGACATGAAGAGATCAGGAATCCATAGCGCGTAAAACAAGTCCCGAGCTCGA 23881
Query 66389 TGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT 66448
|| || | || |||||||| |||||||| | | || || | ||| || ||||||
Sbjct 23880 CTTTCTTCCTTCCCATGATTTTTCCGCAAGTCCAACCAGTCGAACACGTCCGCGTGCCAT 23821
Query 66449 GGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504
|| ||||||||||| || || | || | ||| ||| ||||| ||||| ||
Sbjct 23820 GGCTCCAGGTAGATTGCAAAGGCCCCGGGTCTCTTGTTGCCTCCTTGATCGACATA 23765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397469842697120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |