Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopogon_20vesiculosus_20[genbank_20GCA_5F001882365.1_202016-11- 18] 6,643 sequences; 43,780,879 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2220 228 6e-55 >seq2220 Length=173857 Score = 228 bits (252), Expect = 6e-55 Identities = 396/570 (69%), Gaps = 7/570 (1%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || ||||||||||| | |||||| | ||| | Sbjct 63557 ATATGGCAAATGTACAAGAAGGCCGAGGCATCCTTCTGGACTGCTGAGGAGATGGATCTC 63498 Query 61147 TCCAAAGACATGAATGACTGGG---AGCGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202 || |||||| | |||||||| | ||| | | || | || | || ||||| Sbjct 63497 TCAAAAGACGTTCATGACTGGACCAACCGTCTCAATGA-CAACGAGCGCCACTTCATATC 63439 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 |||||| | || ||||| || || || || || ||||||||||| || | | || || Sbjct 63438 ACATGTACTCGCCTTCTTCGCTGCATCCGATGGCATCGTCAATGAAAACCTCGTTGAGCG 63379 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 |||| | | ||||| || | | || || || || |||||||| ||||| ||| || Sbjct 63378 TTTCTCCAATGAGGTTCAGGCCGCCGAAGCCCGGTGCTTCTACGGTTTCCAAATTATGAT 63319 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 ||||||| | ||||| |||| ||| | |||||||| || || |||| ||| | Sbjct 63318 GGAGAATATTCACTCTGAGACCTACTCACTCCTCATCGACACCTATATCAAGGATCCCAG 63259 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 |||| ||| | ||| ||||||| ||||| || || || ||||| || || || Sbjct 63258 ACAACGCGAATACCTTTTCGATGCCATGGAGACCATTCCCTGCGTTAAGCGCAAGGCCGA 63199 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACG-GCTACATTTGGTGAACGATTGCTGGCAT 61501 ||||| | || ||||| | | | ||||| | || |||| |||||||||| | |||| Sbjct 63198 CTGGGCACTGAAGTGGAT-AACTGATCAACGTTCCACCTTTGCTGAACGATTGGTAGCAT 63140 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 | || | ||||||||| | || ||| ||| || ||||| | ||||| ||| | |||| Sbjct 63139 TCGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCCTTTGCATCCATCTTCTGGCTCAAGA 63080 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 |||| || || ||||| ||||| || ||| ||| ||| | || || || ||||| | Sbjct 63079 AACGCGGTCTCATGCCTGGTCTCACTTTCTCCAACGAGCTCATCAGCCGTGATGAGGGTA 63020 Query 61622 TGCATTGTGATTTTGCTGTTTTGCTATTCA 61651 |||| || |||||| ||||| |||| Sbjct 63019 TGCACACCGACTTTGCTTGCTTGCTCTTCA 62990 Score = 111 bits (122), Expect = 1e-19 Identities = 360/556 (65%), Gaps = 5/556 (1%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| |||||||||||| || || ||||| || ||||| | || || | ||| | Sbjct 64718 ATTTGGAACATGTACAAAAAAGCCGAGGCTTCTTTTTGGACCGCCGAAGAAATGGATCTC 64777 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 |||| ||||| | |||||| | || || | ||||| |||||||| | Sbjct 64778 TCCACTGACATTATCGACTGGAATACCCGCCTAACTTCAAATGAACGTCATTTCATCTCA 64837 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 ||||| || || ||||| || || || ||||| || |||||||||||| | | || || Sbjct 64838 CATGTTTTAGCTTTCTTCGCTGCATCCGACGGCATAGTCAATGAGAATCTGGTTGAGCGG 64897 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 || || | ||||| || | | || || || || || ||||| ||||| || || Sbjct 64898 TTTTCGAACGAGGTTCAGATTGCAGAAGCTCGATGCTTTTACGGGTTCCAAATCATGATC 64957 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 ||||| |||| || |||| || | || ||||| || ||||| ||| Sbjct 64958 GAGAACATCCATTCCGAGACCTATTCACTCCTTATCGACACCCTCATCAAGGATGTCAAT 65017 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 || || | | ||| |||| || ||| | ||||| || || ||||| || || || Sbjct 65018 GAGCGGCAGTTTCTTTTCGATGCAATAGAGTCCATACCCGCCGTTAAGCGCAAGGCAGAC 65077 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAAC-GGCTACATTTGGTGAACGATTGCTGGCATT 61502 ||||| || ||||| | | | ||| || ||||| | | ||| | | || || Sbjct 65078 TGGGCGTTACGATGGAT-ATCTGACAAACATGCCACATTCGCTACCCGACTAGTTGCTTT 65136 Query 61503 TGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAA 61562 ||| | || ||||| | || || || || || || | || || ||| | || || Sbjct 65137 TGCTGCTGTTGAGGGCATCTTCTTTTCCGGTTCTTTCGCATCTATATTCTGGCTCAAAAA 65196 Query 61563 ACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCAT 61622 |||||| | ||||| || || | ||| || || | || || |||||||| || Sbjct 65197 GCGTGGATTGATGCCAGGCCTCGCTTTCTCAAACGAACTCATCAGTCGTGACGAGGGGAT 65256 Query 61623 GCATTGTGATTTTGCT 61638 ||| || |||||| Sbjct 65257 GCACACAGACTTTGCT 65272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397535812273520