Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq281 394 4e-107 >seq281 Length=7449 Score = 394 bits (436), Expect = 4e-107 Identities = 271/305 (89%), Gaps = 2/305 (1%) Strand=Plus/Plus Query 379 TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAA 438 ||||||||||| | ||||| | ||| || ||||||||| ||||||||||||||||||||| Sbjct 3936 TAGGATGCTGGTGGAATGGCTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAA 3995 Query 439 CATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 ||| ||||||| ||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 3996 CATGCTTGCGAGTATTTGGGTGTCAAACCCGGATGCGTAATGAAAGTGAATGGAGGTGGG 4055 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 |||| | ||||||||||||||||||| ||| | | ||||||||||||||||||| Sbjct 4056 AACCGC--AAGGTGCACCATCGACCGATCTGGATTTTTAATGATGGATTTGAGTAAGAGC 4113 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 | |||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 4114 ACGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAA 4173 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 4174 CTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG 4233 Query 679 GGCGA 683 ||||| Sbjct 4234 GGCGA 4238 Score = 237 bits (262), Expect = 7e-60 Identities = 163/183 (89%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||||| ||||||||||||||||||||||||||| || |||| |||||||| | ||||||| Sbjct 3593 TTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAATTGGGTGGTAAATTCCATCTAAAG 3652 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||||||| |||||||||||||| ||||||| |||| ||||||||||||||||| Sbjct 3653 CTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACT 3712 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213 |||||||||||||| || || |||||||||||||| ||||||| |||||| | |||||| Sbjct 3713 TTGGAAAGAGAGTT-AACAGTACGTGAAATTGTTGGAAGGGAAACGCTTGAAGTCAGACT 3771 Query 214 TGC 216 ||| Sbjct 3772 TGC 3774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079977820700