Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02- 24] 1,034 sequences; 19,981,819 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq985 201 9e-47 seq243 114 1e-20 seq64 95.1 1e-14 >seq985 Length=76026 Score = 201 bits (222), Expect = 9e-47 Identities = 429/635 (68%), Gaps = 18/635 (3%) Strand=Plus/Plus Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358 || || | ||||| ||| || | | ||| || || || ||| || || || || ||| Sbjct 18513 GGGCAGAACAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAAGAGGTCGGGGATC 18572 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || || ||| ||||||| || || || || || || ||||||| || ||||| | | Sbjct 18573 CACAGCGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCTTTGCCGTGGTTCTTGCGGAGG 18632 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 |||||||| || |||||||| || ||||| || || |||||||| ||||||| ||| Sbjct 18633 TCGAGGAAGTCGAAGATGTCCGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGT 18692 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 || || ||| |||||||| ||||| || || ||||||||||| || | ||| || Sbjct 18693 CGCTTATTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGC 18752 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598 |||| ||||| || | ||| || ||||| ||||| || || || || || | | Sbjct 18753 ACGATGCCGTTCGAGTAGCCGTTCGTGCCCGCGATGTACGAACCGGTCGCGCGGATGTTG 18812 Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGCCACTG 66656 |||| ||||| || || || || ||||| |||||| || ||| || | || Sbjct 18813 TGAATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCGTG 18872 Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716 || | | ||||| || || ||||| ||| ||||| | |||| |||| || |||| Sbjct 18873 TC--GTAGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTT 18930 Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776 | || | ||| || |||| ||| || ||||| | ||||| || ||||| | | Sbjct 18931 GCGGGTGGGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTCCG 18990 Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCG---CCATGAATCCCGAGTG 66833 |||| | ||||| |||||||| |||| || | ||| || || || |||| | Sbjct 18991 ACATCAAGTTGTAGGTCTCGAT---AGCACGCTTGATGTCGGGTCCGTGGATGCCGACGG 19047 Query 66834 CACATCGCATCAGGAGGTATTGAGGCCGTTCGACCA----GCCGATCCTTGATATGCATT 66889 || ||||| || | || ||||| || || ||| |||| | ||| ||| Sbjct 19048 CAACGCGCATGAGCATGTGCTGAGGACGCTCCGCCACTTTGCCG----TCGATCCGCAGC 19103 Query 66890 AAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 | ||| ||||| || || || |||| ||| ||||| Sbjct 19104 AGGTACGAGCGCTCGAGAGTTTTGAAACCGAAGTA 19138 >seq243 Length=9243 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 || |||||||| | ||||| || || || ||||| ||||| | |||||| || ||| Sbjct 170 CGCGAGGCGGTCGCGATCGAGCAAGAGTTCCTGACCGACGCGCTTCCCGTCAAGCTGATC 229 Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821 |||||||| | | || |||| ||||| || || ||||| |||||||| || | ||| Sbjct 230 GGCATGAACTCGGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTC 289 Query 61822 GATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881 | | || | | ||| || || ||| ||||| || || || ||||||||||| Sbjct 290 GCGCTCGGCAACGAAAAGATTTACAAGGCGACCAACCCGTTCGACTTTATGGACATGATC 349 Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGA 61912 ||| |||| |||||||| || || ||||||| Sbjct 350 TCGATGGAGGGCAAGACCAACTTCTTCGAGA 380 >seq64 Length=12022 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 61162 GACTGGGAGCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTT 61220 ||||||||||| || | ||| | ||||| || || || || || || | || || || Sbjct 5580 GACTGGGAGCGGTTGAACGACAAG-GAACAGCACTTTATCAAGCACGTTCTCGCCTTTTT 5638 Query 61221 TGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCA 61280 ||||| |||||||| |||||||| ||||| | | || || ||| || || || || Sbjct 5639 CGCCGCCTCGGACGGCATCGTCAACGAGAACCTCGTCGAGCGGTTCTCGTCCGAAGTTCA 5698 Query 61281 AGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316 ||| | |||||||| || ||||||||||||||||| Sbjct 5699 AGTAGCCGAGGCGCGCTGCTTCTACGGCTTCCAGAT 5734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397562989897760