Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20mucilaginosa_20[genbank_20GCA_5F000931965.1_202015-02-
24] 1,034 sequences; 19,981,819 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq985 201 9e-47
seq243 114 1e-20
seq64 95.1 1e-14
>seq985
Length=76026
Score = 201 bits (222), Expect = 9e-47
Identities = 429/635 (68%), Gaps = 18/635 (3%)
Strand=Plus/Plus
Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358
|| || | ||||| ||| || | | ||| || || || ||| || || || || |||
Sbjct 18513 GGGCAGAACAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAAGAGGTCGGGGATC 18572
Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418
|| || ||| ||||||| || || || || || || ||||||| || ||||| | |
Sbjct 18573 CACAGCGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCTTTGCCGTGGTTCTTGCGGAGG 18632
Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478
|||||||| || |||||||| || ||||| || || |||||||| ||||||| |||
Sbjct 18633 TCGAGGAAGTCGAAGATGTCCGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGT 18692
Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538
|| || ||| |||||||| ||||| || || ||||||||||| || | ||| ||
Sbjct 18693 CGCTTATTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGC 18752
Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598
|||| ||||| || | ||| || ||||| ||||| || || || || || | |
Sbjct 18753 ACGATGCCGTTCGAGTAGCCGTTCGTGCCCGCGATGTACGAACCGGTCGCGCGGATGTTG 18812
Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGCCACTG 66656
|||| ||||| || || || || ||||| |||||| || ||| || | ||
Sbjct 18813 TGAATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCGTG 18872
Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716
|| | | ||||| || || ||||| ||| ||||| | |||| |||| || ||||
Sbjct 18873 TC--GTAGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTT 18930
Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776
| || | ||| || |||| ||| || ||||| | ||||| || ||||| | |
Sbjct 18931 GCGGGTGGGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTCCG 18990
Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCG---CCATGAATCCCGAGTG 66833
|||| | ||||| |||||||| |||| || | ||| || || || |||| |
Sbjct 18991 ACATCAAGTTGTAGGTCTCGAT---AGCACGCTTGATGTCGGGTCCGTGGATGCCGACGG 19047
Query 66834 CACATCGCATCAGGAGGTATTGAGGCCGTTCGACCA----GCCGATCCTTGATATGCATT 66889
|| ||||| || | || ||||| || || ||| |||| | ||| |||
Sbjct 19048 CAACGCGCATGAGCATGTGCTGAGGACGCTCCGCCACTTTGCCG----TCGATCCGCAGC 19103
Query 66890 AAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924
| ||| ||||| || || || |||| ||| |||||
Sbjct 19104 AGGTACGAGCGCTCGAGAGTTTTGAAACCGAAGTA 19138
>seq243
Length=9243
Score = 114 bits (126), Expect = 1e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761
|| |||||||| | ||||| || || || ||||| ||||| | |||||| || |||
Sbjct 170 CGCGAGGCGGTCGCGATCGAGCAAGAGTTCCTGACCGACGCGCTTCCCGTCAAGCTGATC 229
Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821
|||||||| | | || |||| ||||| || || ||||| |||||||| || | |||
Sbjct 230 GGCATGAACTCGGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTC 289
Query 61822 GATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881
| | || | | ||| || || ||| ||||| || || || |||||||||||
Sbjct 290 GCGCTCGGCAACGAAAAGATTTACAAGGCGACCAACCCGTTCGACTTTATGGACATGATC 349
Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGA 61912
||| |||| |||||||| || || |||||||
Sbjct 350 TCGATGGAGGGCAAGACCAACTTCTTCGAGA 380
>seq64
Length=12022
Score = 95.1 bits (104), Expect = 1e-14
Identities = 116/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 61162 GACTGGGAGCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTT 61220
||||||||||| || | ||| | ||||| || || || || || || | || || ||
Sbjct 5580 GACTGGGAGCGGTTGAACGACAAG-GAACAGCACTTTATCAAGCACGTTCTCGCCTTTTT 5638
Query 61221 TGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCA 61280
||||| |||||||| |||||||| ||||| | | || || ||| || || || ||
Sbjct 5639 CGCCGCCTCGGACGGCATCGTCAACGAGAACCTCGTCGAGCGGTTCTCGTCCGAAGTTCA 5698
Query 61281 AGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316
||| | |||||||| || |||||||||||||||||
Sbjct 5699 AGTAGCCGAGGCGCGCTGCTTCTACGGCTTCCAGAT 5734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397562989897760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |