Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq10 201 9e-47 seq1 120 2e-22 >seq10 Length=415605 Score = 201 bits (222), Expect = 9e-47 Identities = 429/635 (68%), Gaps = 18/635 (3%) Strand=Plus/Plus Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358 || || | ||||| ||| || | | ||| || || || ||| || || || || ||| Sbjct 14728 GGGCAGAACAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAACAGGTCGGGGATC 14787 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || || ||| ||||||| || || || || || || ||||||| || ||||| | | Sbjct 14788 CACAGCGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCCTTGCCGTGGTTCTTGCGGAGG 14847 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 |||||||| || ||||||||||| ||||| || || |||||||| ||||||| ||| Sbjct 14848 TCGAGGAAGTCGAAGATGTCGGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGT 14907 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 || ||| ||| |||||||| ||||| || || ||||||||||| || | ||| || Sbjct 14908 CGCTTGTTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGC 14967 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598 |||| || || || | ||| || |||||| ||||| || || || || || | | Sbjct 14968 ACGATGCCATTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTG 15027 Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGCCACTG 66656 |||| ||||| || || || || ||||| |||||| || ||| || | || Sbjct 15028 TGAATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCGTG 15087 Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716 || | | ||||| || || ||||| ||| ||||| | |||| |||| || |||| Sbjct 15088 TC--GTAGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTT 15145 Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776 | || | || || |||| ||| || ||||| | ||||| || ||||| | | Sbjct 15146 GCGGGTGAGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTCCG 15205 Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCG---CCATGAATCCCGAGTG 66833 |||| | ||||| || ||||| |||| || | ||| || || || |||| | Sbjct 15206 ACATCAAGTTGTAGGTTTCGAT---AGCACGCTTGATGTCGGGTCCGTGGATGCCGACGG 15262 Query 66834 CACATCGCATCAGGAGGTATTGAGGCCGTTCGACCA----GCCGATCCTTGATATGCATT 66889 || ||||| || | || ||||| || || ||| |||| | ||| ||| Sbjct 15263 CAACGCGCATGAGCATGTGCTGAGGACGCTCCGCCACTTTGCCG----TCGATCCGCAGC 15318 Query 66890 AAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 || || ||||| || || || |||| ||| ||||| Sbjct 15319 AAATACGAGCGCTCGAGAGTTTTGAAACCGAAGTA 15353 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 61162 GACTGGGAGCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTT 61220 ||||||||||| || | ||| | ||||| || || || || || || | || || || Sbjct 170887 GACTGGGAGCGGTTGAACGACAAG-GAACAGCACTTTATCAAGCACGTTCTCGCCTTTTT 170829 Query 61221 TGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCA 61280 ||||| |||||||| |||||||| ||||| | | || || ||| || ||||| || Sbjct 170828 CGCCGCCTCGGACGGCATCGTCAACGAGAACCTCGTCGAGCGGTTCTCGTCCGAGGTTCA 170769 Query 61281 AGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316 || | ||||| || || ||||||||||||||||| Sbjct 170768 GGTCGCAGAGGCTCGCTGCTTCTACGGCTTCCAGAT 170733 >seq1 Length=1017535 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 || |||||||| | ||||| || || || ||||| ||||| ||||| ||| || ||| Sbjct 200988 CGCGAGGCGGTCGCGATCGAGCAAGAGTTCCTGACGGACGCGTTGCCGGTCAAGCTGATC 200929 Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821 |||||||| | | || |||| ||||| || || ||||| |||||||| || | ||| Sbjct 200928 GGCATGAACTCGGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTC 200869 Query 61822 GATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881 | | || | | ||| || || ||| ||||| || || || ||||||||||| Sbjct 200868 GCGCTCGGCAACGAAAAGATTTACAAGGCGACTAACCCGTTCGACTTTATGGACATGATC 200809 Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGA 61912 ||| |||| |||||||| || || ||||||| Sbjct 200808 TCGATGGAGGGCAAGACCAACTTCTTCGAGA 200778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567244123840