Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05-
06] 245 sequences; 20,278,264 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq203 113 2e-19
seq206 87.8 7e-12
seq217 86.0 3e-11
seq46 86.0 3e-11
>seq203
Length=392800
Score = 113 bits (124), Expect = 2e-19
Identities = 265/394 (67%), Gaps = 16/394 (4%)
Strand=Plus/Plus
Query 88929 ACCTTCATCATGGCCGATGCCGAGAGCCGCGG--ACGGGCCGTGGCGCGCAAGTTCACCG 88986
|||||||||||| ||| ||| |||| | || | | ||| |||||| ||| ||
Sbjct 26489 ACCTTCATCATGCCCG--GCCAGGAGCTGAGGCGAAAGAACGTCCGCCGCAAGCTCAACG 26546
Query 88987 CCGTGGGCCGAGAGTGCAGGGACAAGGCCGTGGTCGTGGTGGACGACTCTGTCGTGCGCG 89046
| ||| || |||| | | |||| ||| | | || |||||||| | |||||||
Sbjct 26547 CGATGGCCCTCGAGTTCGCCGGCAAGAACGTCATGATCGTCGACGACTCGATTGTGCGCG 26606
Query 89047 GCACCACATCCAAGTTCATAATCGACCTCCTTCGCAAGTCTGGCGCCACCAAGGTCTACC 89106
| || || || ||| || |||| | | ||| || | ||||||| |||||| |
Sbjct 26607 GGACAACCTCGAAGGAGATTATCGTCATGGCGCGCGAGGCGGGCGCCAAGAAGGTCATCA 26666
Query 89107 TCGCTTCTTGCTCTCCCCCGATCCGTTACCCCAACGTGTACGGCATCGACATACC--GTC 89164
| ||||||||| |||| || ||||| ||||| |||||||||||| || || || |||
Sbjct 26667 TGGCTTCTTGCGCTCCTCCCATCCGCTACCCTTGCGTGTACGGCATTGATATGCCGAGTC 26726
Query 89165 GGCCAAGGAGCTCATTGCTTCTGGTCGCACCGAGCACGAGGTGGCTCTCCTCCTCGGAGC 89224
| | | |||||| | || | ||||| ||| |||| | || | |||| ||
Sbjct 26727 G--CCATGAGCTCGTCGCACACGACCGCACGGAGGACGAAATCGCCGAGTACATCGGCGC 26784
Query 89225 CGACCAGGTCATCTATCAGAGTGTCGACGAC----TTGCAAGCGGCCTGTCGCCAGTTCA 89280
|||||| |||||| |||| |||||||| | | ||| ||| | |||| |||
Sbjct 26785 CGACCACATCATCTTCCAGACACTCGACGACCTCGTCTCCAGCTGCCAG-CGCC---TCA 26840
Query 89281 ATCCCTCCATCACGGCCTTTGAGGCCTCTGTCTT 89314
| ||||||||| | ||| ||| ||| |||||
Sbjct 26841 ACCCCTCCATCGAGCGCTTCGAGTGCTCCGTCTT 26874
>seq206
Length=411018
Score = 87.8 bits (96), Expect = 7e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 349032 CGAGGTAGACCGACGCATTGGGCTTCTTCATCTTGGGCGTGGCGTCGAGAATCTCCTTGA 349091
|||||||||| | || ||| |||| | ||| | | ||| || ||||||||||
Sbjct 4692 CGAGGTAGACGGTCGTCGACGGCGTCTTGAGGTTGACGGCGACGTTGATGATCTCCTTGA 4751
Query 349092 GTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGA 349151
| | || | || || || |||||||| | || || ||||| ||||||| || | ||
Sbjct 4752 GACGCGGTACACCGAGCGTGACGTTCTTTGACGACACACCGGCGTAGTGGAACGTGTTGA 4811
Query 349152 GGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGC 349211
| |||| |||||| ||||| || || |||| ||||||| |||| ||||||||
Sbjct 4812 GCGTCATCTGCGTCGCCGGCTCACCAATCGACTGCGCCGCGAGCGTGCCGCACATCTCGC 4871
Query 349212 CGGGCGCG 349219
| ||||||
Sbjct 4872 CCGGCGCG 4879
>seq217
Length=194401
Score = 86.0 bits (94), Expect = 3e-11
Identities = 118/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046
|||||||| | || || ||||||||||| ||| | | |||||||||||||| | |||
Sbjct 98996 CTCGAGCATCTTGCCGACCGTCATGCGCGAGGGGAAACCGTGCGGGTTCATGATCACGTC 99055
Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGAC 449106
||| ||| ||||||| ||||||||||| | ||| | || ||| |||
Sbjct 99056 GGGGCAGATGCCCTGGTCGTTGAACGGCATGTCCTCCTGCGGGACGATGAGACCGCAGAC 99115
Query 449107 GCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGG 449151
|||||||| |||||||| |||||||||| || |||| ||
Sbjct 99116 ACCCTTCTGACCGTGGCGAGACGAGAACTTGTCTCCGAGCTCAGG 99160
>seq46
Length=115527
Score = 86.0 bits (94), Expect = 3e-11
Identities = 174/256 (68%), Gaps = 2/256 (1%)
Strand=Plus/Minus
Query 448987 CTCGAGCAACATGGCGTA-GGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGT 449045
||||| ||| ||||| | |||||||||||| ||| ||| || ||||| ||||| | ||
Sbjct 114816 CTCGACCAA-ATGGCCGATGGTCATGCGCGAGGGGATGGCGTGAGGGTTGATGATCAGGT 114758
Query 449046 CGGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGA 449105
||||||| || | || ||| |||||||||||| || | | |||| |
Sbjct 114757 CGGGCGTGATCCCCTCTGCCGAGAACGGCATGTCCTCGTGGCGGTAGGTAATGCCGATCG 114698
Query 449106 CGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGTGAAGC 449165
|||||||| |||||||| | ||||||||| || ||||||| || || |||
Sbjct 114697 TACCCTTCTGACCGTGGCGAGAGGCGAACTTGTCACCGATCTCGGGCACACGGGTCGAGC 114638
Query 449166 GCAGCACGATCTTGATGGAGCGGAAGCCGTCCCTGTTGGTGGTGTCGATGACCGACTCCA 449225
| | |||||||| | || ||| ||| |||||| ||| || |||| || |
Sbjct 114637 GGATACGGATCTTGACAAACTTGAGGCCTTCCGAGTTGGTCGTGAGGAGGACCTGGTCGA 114578
Query 449226 CGACGGCGTCGTCGGT 449241
||| | ||| |||||
Sbjct 114577 CGAGGCCGTTCTCGGT 114562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2084732496260510
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |