Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1 334 1e-89 seq83 226 5e-57 >seq1 Length=8831 Score = 334 bits (370), Expect = 1e-89 Identities = 252/294 (86%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 17 GCCTTTCCTTCTGGGGATCCGC-ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTT 75 ||||| ||| |||| || | || ||| |||||||||||||| | | ||||||| || Sbjct 1925 GCCTTACCTCCTGGTGAACAGCGATGTCCTTCACTGGGTGTCGTTGCAAACCAGGACGTT 1984 Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAAT 135 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1985 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCCCGAATACATTAGCATGGAAT 2044 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 |||||||||||||| ||| | | ||||||||||||||| || ||||||||||||||||| Sbjct 2045 AATAGAATAGGACGCGCGTTCCCATTTTGTTGGTTTCTGAGATCGCCGTAATGATTAATA 2104 Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 |||||||| ||||| | |||||| | ||||||||||||||||||||||| |||| Sbjct 2105 GGGATAGTTGGGGGCATTTGTATTCCGTCGTCAGAGGTGAAATTCTTGGATTGCCGGAAG 2164 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 || ||||||||||||||| || ||||||||||||||||| |||| ||||||| Sbjct 2165 ACAAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCA-AGAACGAA 2217 >seq83 Length=5474 Score = 226 bits (250), Expect = 5e-57 Identities = 139/148 (94%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 5059 ATGGAATAATAGAATAGGACGTTTGGTTCTATTTTGTTGGTTTCTAGGACCATCGTAATG 5118 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 5119 ATTAATAGGGACGGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 5178 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTT 276 ||||||||||||||||||||||||| || Sbjct 5179 ATTGAAGACTAACTACTGCGAAAGCATT 5206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915198004864