Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1 540 4e-151 >seq1 Length=8831 Score = 540 bits (598), Expect = 4e-151 Identities = 534/691 (77%), Gaps = 61/691 (9%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||| | | ||||||||||||||||||||||||||||||||| || |||| ||||||| Sbjct 3811 TGTGATACACTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAATTGGGTGGTAAAT 3870 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | | ||||||||||||||||||| |||||||||||||| ||||||| |||| |||||| Sbjct 3871 TCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGA 3930 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 ||||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||| Sbjct 3931 TGAAAAGCACTTTGGAAAGAGAGTTAAAA-GTACGTGAAATTGTTGGAAGGGAAACGCTT 3989 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGT 262 | | ||||||||| |||| ||| | ||| | || ||| Sbjct 3990 GAAGTCAGACTTGC------TTGC-------------CGGGCT-TGCTCGGTT-TGC--- 4025 Query 263 CAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGG 322 ||||||||||||| | || ||||||| ||| |||||| || || || Sbjct 4026 -AGGCCAGCATCAGTTTTCTGGGACGGATAATGGCAGTTAGAATGTAGCAGTCTC--GGC 4082 Query 323 GGTGTTATAGC-----------------CCGGGGT-----GGAATGCGGCCCGCCT---- 356 |||||||||| | |||| |||| || || ||| Sbjct 4083 TGTGTTATAGCTTTCTGCTGGATACGTCCTGGGGGACTGAGGAACGCAGCGTGCCGTATG 4142 Query 357 ----GGACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGT 412 || || ||||| | | | ||||||||||| | ||||| | ||| || ||||| Sbjct 4143 GCGAGGGCTTTGGTCCTTTCAC-GCTTAGGATGCTGGTGGAATGGCTTTAAACGACCCGT 4201 Query 413 CTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGC 472 |||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 4202 CTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTTGGGTGTCAAACCCGGAT 4261 Query 473 GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGAT 532 |||||||||||||||| ||||||||||| | | | ||||||||||||||||| ||| Sbjct 4262 GCGTAATGAAAGTGAATGGAGGTGGGAAGCGC--AAGCTGCACCATCGACCGATCTGGAT 4319 Query 533 GTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATG 592 | | |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 4320 TTTCTAAGATGGATTTGAGTAAGAGCACGTATGTTGGGACCCGAAAGATGGTGAACTATG 4379 Query 593 CCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCA 652 ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 4380 CCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCA 4439 Query 653 AATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||||||||||||||||||||||| Sbjct 4440 AATCGATCGTCAAATTTGGGTATAGGGGCGA 4470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079995323900