Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1 143 4e-32 seq83 132 8e-29 >seq1 Length=8831 Score = 143 bits (158), Expect = 4e-32 Identities = 208/283 (73%), Gaps = 8/283 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | |||||||| |||||||||||| || | |||| | Sbjct 6562 GTACGAGAGGAACCGTTGA-TTC-GCGTAATTGGTATTTGCGGCTGTCCGATCGGGCAAT 6619 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||| | ||||||||||||||||||||||||| |||||||| ||| | Sbjct 6620 GCCGCGAAGCTACCACGCGTTGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 6679 Query 121 GAACGGGGTGAT-TCTCTCCTGCACATCGTAGTCGGATACGAATAG-GCTTCGGC-CCCG 177 ||| | |||| | ||| ||| ||| |||||| || |||| |||||||| | Sbjct 6680 GAA-ACGATGATGTTAGTCCCGCAAATCTTAGTCGAGTAAAGATAGAGCTTCGGCTCGTA 6738 Query 178 AACCTTAGCAGGCCGGCAACGGGC-GTCCCGCGG-AAGCGCGGGGCGCTCAGCTGGCGGA 235 |||| ||| ||| || ||| | | |||| ||| | | | || | |||| | Sbjct 6739 AACCATAGTTGGCTGGTCACGTTCTGCAGGGCGGAAAGGCCTTGTAGTTCTACCGGCGAA 6798 Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 | ||| | | || || ||| ||||||||||||||||||| Sbjct 6799 TAGCATTCGAAATATTTGCGGGGGTAAATCCTTTGCAGACGAC 6841 >seq83 Length=5474 Score = 132 bits (146), Expect = 8e-29 Identities = 92/102 (90%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | | ||| || |||||||||||||||||||||||| |||||| | Sbjct 55 GTACGAGAGGAACAGTTCA-TTCGGA-TAATTGGTTTTTGCGGCTGTCTGATCAGGCATT 112 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCT 102 ||||||||||||||||| |||||||||||||||||||||||| Sbjct 113 GCCGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCT 154 Score = 127 bits (140), Expect = 3e-27 Identities = 158/210 (75%), Gaps = 16/210 (8%) Strand=Plus/Plus Query 84 ATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGA-TTCTCTCCT-- 140 ||||||||||||||||||||||||||||||||||| |||||| ||||| |||| | || Sbjct 224 ATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTAGAACGCGGTGATTTCTTTGCTCC 283 Query 141 GCACATCGTAGTCGGATACGAAT-AGGCTT--------CGGCCCCGAACCTTAGCAGGCC 191 |||| ||| |||||||||| |||| | || | | ||||| |||||||| Sbjct 284 ACACAATATAGATGGATACGAATAAGGCGTCCTTGTGGCGTCGCTGAACCATAGCAGGCT 343 Query 192 GGCAACGG-GCGTCCCGCGGAA--GCGCGGGGCGCTCAGCTGGCGGATTGCAATTTCACC 248 ||||||| || |||||| || ||| ||| |||||||||||||||| ||| Sbjct 344 AGCAACGGTGCACTTGGCGGAAAGGCCTTGGGTGCT-TGCTGGCGGATTGCAATGTCATT 402 Query 249 ATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||| |||||||||| |||| | ||||| Sbjct 403 TTGCGTGGGGATAAATCATTTGTATACGAC 432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819198269952