Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1 630 2e-178 seq83 601 1e-169 >seq1 Length=8831 Score = 630 bits (698), Expect = 2e-178 Identities = 449/510 (88%), Gaps = 8/510 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||| |||||||| |||||||||| || ||||||||||||||| || Sbjct 1755 GTACTCATTCCAATTGCAAGACCCGTAAGAGCCCTGCATTGTTATTTATTGTCACTATCT 1696 Query 61 CCCC---GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCT-TCCTTGGATGTGGTAGC 116 | | |||| | | || ||||||||||||||||||| | ||||| || || || Sbjct 1695 CGGCAAAGTGTTGCCAGGGGATAATTTGCGCGCCTGCTGCGTGTCCTTAGACCTGAGGGC 1636 Query 117 CGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCAT 176 |||||||||||| | ||||||||||||||||||| |||||||||||||||| ||||| Sbjct 1635 CGTTTCTCAGGCCCTCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTCATCACCAT 1576 Query 177 GGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236 |||||||| ||||||||||||||||||||||||||||||| ||| ||||||| ||||||| Sbjct 1575 GGTAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTCGAATGAAGCATCGCC 1516 Query 237 GGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGT 296 ||| ||||||||||||||||| |||||| |||| ||||||||||| |||||||| ||| Sbjct 1515 GGCACAAGGCCATGCGATTCGAGCAGTTATCATGATTCACCAAGGAGACCCGAAGGCCGT 1456 Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTT-AGCATGTATTAG 354 ||||||| |||||||||||||| ||||||| ||||||||| ||||| |||||||||||| Sbjct 1455 TGGTTTTGGATCTAATAAATACATCCCTTCCAGAAGTCGGGATTTTTCAGCATGTATTAG 1396 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 ||||||||||||||| ||||||||||||||||||||| |||||||| || || ||||||| Sbjct 1395 CTCTAGAATTACCACAGTTATCCATGTAGTAAGGTACCATCAAATAGACTATGACTGATT 1336 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAA 474 |||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||| Sbjct 1335 TAATGAGCCATTCGCAGTTTCACTGTTT--ATTGCTTAAACTTAGACATGCATGGCTTAA 1278 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| Sbjct 1277 TCTTTGAGACAAGCATATGACTACTGGCAG 1248 >seq83 Length=5474 Score = 601 bits (666), Expect = 1e-169 Identities = 397/433 (92%), Gaps = 6/433 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||| || | |||||||||| |||||||||||||||||| Sbjct 4635 GTACTCATTCCAATTACAAGACCCGAATGGGCCCTGTATCGTTATTTATTGTCACTACCT 4576 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4575 CCCTGAATTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 4516 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 4515 TCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGAAACCATGGTA 4456 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 4455 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCAGCA 4396 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| |||||||||||||||| ||| ||| ||||| | | ||| | Sbjct 4395 CAAGGCCATGCGATTCGAAAAGTTATTATGAATCATCAAAGAG-TCCGAA-GACATTGAT 4338 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAA--GTCGGGGTTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||| | ||||| || |||| | |||| |||||||||||||||| Sbjct 4337 TTTTTATCTAATAAATACATCTCTTCCAAAGGGTCGAGATTTTAAGCATGTATTAGCTCT 4278 Query 359 AGAATTACCACGGTTAT-CCATGTAGT-AAGGTACTATCAAATAAACGATAACTGATTTA 416 ||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||| Sbjct 4277 AGAATTACCACAGTTATACCATGTAGTAAAGGAACTATCAAATAAACGATAACTGATTTA 4218 Query 417 ATGAGCCATTCGC 429 ||||||||||||| Sbjct 4217 ATGAGCCATTCGC 4205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510396707328