Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq196 228 6e-55 seq165 113 4e-20 seq175 98.7 8e-16 >seq196 Length=101194 Score = 228 bits (252), Expect = 6e-55 Identities = 387/559 (69%), Gaps = 4/559 (1%) Strand=Plus/Minus Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 ||| || || | ||| || ||||| ||| || || || || ||||| ||||| |||| Sbjct 13617 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAA 13558 Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432 | ||||| || || |||||| ||||||| || ||||| | |||||||||||| || Sbjct 13557 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 13498 Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492 ||||||||| ||||| || || |||||||||||||||| |||| || ||| ||| || Sbjct 13497 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCC 13438 Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552 |||||||||||||| || |||||| | || || | ||| || | || ||||| || Sbjct 13437 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 13378 Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACC 66612 | ||| || |||||| ||||| || || || || || | ||| | || || Sbjct 13377 GTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGCC 13318 Query 66613 AATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAATATGCCG 66670 || || || |||||||| |||||| ||| | || | | || | | ||||| Sbjct 13317 GATGCCGCCTGCCGTCTTGGAGATG--AGCGCGCACGTCTTGAGCGTGTCGTAGATGCCC 13260 Query 66671 TCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTG 66730 || || ||||| |||| || || | |||| |||| || || || || | || ||| Sbjct 13259 TCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCGTG 13200 Query 66731 GCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTAC 66790 |||| |||||| || || | |||||||||||||| | |||||| |||||| Sbjct 13199 CCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTAC 13140 Query 66791 GTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGG 66850 |||||||| | ||||||| ||||| || || |||| || ||||| || | | Sbjct 13139 GTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAGCATG 13080 Query 66851 TATTGAGGCCGTTCGACCA 66869 | || || || ||| ||| Sbjct 13079 TGCTGCGGTCGCTCGGCCA 13061 >seq165 Length=391853 Score = 113 bits (124), Expect = 4e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 || |||||||| ||||| || || || || || || || |||||||| |||||| Sbjct 47915 CGCGAGGCGGTCGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATC 47856 Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821 |||||||| | | || |||| ||||| || || |||||||||||||| || | ||| Sbjct 47855 GGCATGAACAGCGACCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTC 47796 Query 61822 G-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGAT 61880 | | |||| | | || |||||| | | | | ||||| || || |||||||| ||||| Sbjct 47795 GCACTTGGCAACG-AGAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGAT 47737 Query 61881 TTCGCTGGATGGCAAGACGAA 61901 ||| |||| |||||||| || Sbjct 47736 CTCGATGGAGGGCAAGACCAA 47716 >seq175 Length=283523 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || ||||| |||||||||||||| |||||||| ||||| || |||| | ||| || | Sbjct 257841 GCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACTTGGTGGAGAGGTTCTCGGCG 257900 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316 |||||||| | | |||||||| ||||||||||| |||||||| Sbjct 257901 GAGGTGCAGATTGCCGAGGCGCGCTGTTTCTACGGTTTCCAGAT 257944 Score = 86.0 bits (94), Expect = 5e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 61717 ATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776 ||||| |||||||| ||||| ||||| ||||||||| | ||||||||||| Sbjct 258517 ATCGAGCAGGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCATGAACGCGACC 258576 Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAA 61835 || ||| ||||| || || || || || ||||| || | |||| ||||| | | | Sbjct 258577 CTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCTTGGGAACG-A 258635 Query 61836 GCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAA 61895 | | | || ||| | | ||||| || || || ||||| ||||| ||| |||| ||||| Sbjct 258636 GAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGATGGAGGGCAA 258695 Query 61896 GACGAA 61901 ||| || Sbjct 258696 GACCAA 258701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566943711520