Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988875.1_202015-05- 06] 218 sequences; 20,361,044 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq79 91.5 6e-13 seq13 86.0 3e-11 seq215 84.2 9e-11 >seq79 Length=666268 Score = 91.5 bits (100), Expect = 6e-13 Identities = 111/151 (74%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161 ||||||| |||||||||||||||||||| ||| |||||| || |||||| || || || Sbjct 550886 TCTCGTCGCCGTCAAAGTCGGCGTTGTACGGCGAGGTGACAGAGAGGTTGAGGCGGAAGG 550827 Query 351162 TGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGG 351221 | || ||| || || | ||||||||| |||| || ||| ||||| | || | Sbjct 550826 TCGAG---TACGGCATGAGCTTGACGCGGTGCGCCATCATCGACATCTTGTGCAACGACG 550770 Query 351222 GCTGGCGATTGTGGATGATGATGTCGCCATC 351252 |||| || ||| | || ||||||||| || Sbjct 550769 GCTGCCGGTTGAACAGGACGATGTCGCCGTC 550739 Score = 91.5 bits (100), Expect = 6e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 349032 CGAGGTAGACCGACGCATTGGGCTTCTTCATCTTGGGCGTGGCGTCGAGAATCTCCTTGA 349091 |||||||||| | || ||| |||| | ||| | | ||| || |||||||||| Sbjct 552846 CGAGGTAGACGGTCGTCGACGGCGTCTTGAGGTTGACGGCGACGTTGATGATCTCCTTGA 552787 Query 349092 GTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGA 349151 | | || | || || || |||||||| | || ||| ||||| | |||||||| | || Sbjct 552786 GACGCGGGACACCGAGCGTGACGTTCTTCGACGAGACACCGGCGTAATGGAAGGTGTTGA 552727 Query 349152 GGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGC 349211 | |||| |||||| ||||| ||||| |||| | ||||| |||| |||||||| Sbjct 552726 GCGTCATCTGCGTCGCCGGCTCACCGATCGACTGCGCGGCGAGCGTGCCGCACATCTCGC 552667 Query 349212 CGGGCGCG 349219 | |||||| Sbjct 552666 CCGGCGCG 552659 >seq13 Length=395930 Score = 86.0 bits (94), Expect = 3e-11 Identities = 115/159 (72%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| |||||| || |||||||| || || ||||||||||||| ||||||| ||| Sbjct 27523 CTCGACGAACATGCCGATTGTCATGCGGGAGGGAAAGGCATGCGGGTTGATGATGACGTC 27582 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGT---CCTCGGGGTTGACCACCAGGCCGTT 449103 |||| | ||| | | || |||||||||||| || | |||| | | | | Sbjct 27583 GGGCTGCATGCCAGACTCGGTGAAGGGCATGTCGACCGCCGGGT---ACTTCTGCGAGCA 27639 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCC 449142 ||| ||||||||||||||||| |||||||||| || Sbjct 27640 GACACCCTTCTGGCCGTGGCGAGACGAGAACTTGTCGCC 27678 >seq215 Length=181685 Score = 84.2 bits (92), Expect = 9e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 448981 GAGGGCCTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGAT 449040 |||| |||||||| | || || |||||||| || ||| | | |||||||||||||| Sbjct 110696 GAGGAGCTCGAGCATCTTGCCGACCGTCATGCGGGAGGGGAAACCGTGCGGGTTCATGAT 110755 Query 449041 GATGTCGGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCC 449100 | |||||| ||| ||||||| ||||||||||| | ||| | || || Sbjct 110756 CACGTCGGGGCAGATGCCCTGGTCGTTGAACGGCATGTCCTCCTGCGGGACGATGAGACC 110815 Query 449101 GTTGACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGG 449151 | ||| |||||||| |||||||| |||||||||| || | ||||| Sbjct 110816 GCAGACACCCTTCTGACCGTGGCGAGACGAGAACTTGTCGCCGAGTTCGGG 110866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084733235039964