Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001255795.1_202015-07- 26] 30 sequences; 20,810,536 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq15 228 6e-55 seq5 113 4e-20 >seq15 Length=702288 Score = 228 bits (252), Expect = 6e-55 Identities = 387/559 (69%), Gaps = 4/559 (1%) Strand=Plus/Minus Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 ||| || || | ||| || ||||| ||| || || || || ||||| ||||| |||| Sbjct 566104 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAA 566045 Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432 | ||||| || || |||||| ||||||| || ||||| | |||||||||||| || Sbjct 566044 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 565985 Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492 ||||||||| ||||| || || |||||||||||||||| |||| || ||| ||| || Sbjct 565984 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCC 565925 Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552 |||||||||||||| || |||||| | || || | ||| || | || ||||| || Sbjct 565924 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 565865 Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACC 66612 | ||| || |||||| ||||| || || || || || | ||| | || || Sbjct 565864 GTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGCC 565805 Query 66613 AATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAATATGCCG 66670 || || || |||||||| |||||| ||| | || | | || | | ||||| Sbjct 565804 GATGCCGCCTGCCGTCTTGGAGATG--AGCGCGCACGTCTTGAGCGTGTCGTAGATGCCC 565747 Query 66671 TCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTG 66730 || || ||||| |||| || || | |||| |||| || || || || | || ||| Sbjct 565746 TCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCGTG 565687 Query 66731 GCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTAC 66790 |||| |||||| || || | |||||||||||||| | |||||| |||||| Sbjct 565686 CCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTAC 565627 Query 66791 GTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGG 66850 |||||||| | ||||||| ||||| || || |||| || ||||| || | | Sbjct 565626 GTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAGCATG 565567 Query 66851 TATTGAGGCCGTTCGACCA 66869 | || || || ||| ||| Sbjct 565566 TGCTGCGGTCGCTCGGCCA 565548 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || ||||| |||||||||||||| |||||||| ||||| || |||| | ||| || | Sbjct 257833 GCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACTTGGTGGAGAGGTTCTCGGCG 257892 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316 |||||||| | | |||||||| ||||||||||| |||||||| Sbjct 257893 GAGGTGCAGATTGCCGAGGCGCGCTGTTTCTACGGTTTCCAGAT 257936 Score = 86.0 bits (94), Expect = 5e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 61717 ATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776 ||||| |||||||| ||||| ||||| ||||||||| | ||||||||||| Sbjct 258509 ATCGAGCAGGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCATGAACGCGACC 258568 Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAA 61835 || ||| ||||| || || || || || ||||| || | |||| ||||| | | | Sbjct 258569 CTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCTTGGGAACG-A 258627 Query 61836 GCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAA 61895 | | | || ||| | | ||||| || || || ||||| ||||| ||| |||| ||||| Sbjct 258628 GAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGATGGAGGGCAA 258687 Query 61896 GACGAA 61901 ||| || Sbjct 258688 GACCAA 258693 >seq5 Length=1666694 Score = 113 bits (124), Expect = 4e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 || |||||||| ||||| || || || || || || || |||||||| |||||| Sbjct 1125168 CGCGAGGCGGTCGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATC 1125109 Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821 |||||||| | | || |||| ||||| || || |||||||||||||| || | ||| Sbjct 1125108 GGCATGAACAGCGACCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTC 1125049 Query 61822 G-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGAT 61880 | | |||| | | || |||||| | | | | ||||| || || |||||||| ||||| Sbjct 1125048 GCACTTGGCAACG-AGAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGAT 1124990 Query 61881 TTCGCTGGATGGCAAGACGAA 61901 ||| |||| |||||||| || Sbjct 1124989 CTCGATGGAGGGCAAGACCAA 1124969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567854639200