Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq38 545 1e-152 >seq38 Length=22345 Score = 545 bits (604), Expect = 1e-152 Identities = 534/690 (77%), Gaps = 60/690 (9%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||| | | ||||||||||||||||||||||||||||||||| || |||| ||||||| Sbjct 18431 TGTGATACACTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAATTGGGTGGTAAAT 18490 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | | ||||||||||||||||||| |||||||||||||| ||||||| |||| |||||| Sbjct 18491 TCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGA 18550 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 ||||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||| Sbjct 18551 TGAAAAGCACTTTGGAAAGAGAGTTAAAA-GTACGTGAAATTGTTGGAAGGGAAACGCTT 18609 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGT 262 | | ||||||||| |||| ||| | ||| | || ||| Sbjct 18610 GAAGTCAGACTTGC------TTGC-------------CGGGCT-TGCTCGGTT-TGC--- 18645 Query 263 CAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGG 322 ||||||||||||| | || ||||||| ||| |||||| || || || Sbjct 18646 -AGGCCAGCATCAGTTTTCCGGGGCGGATAATGGCAGTTAGAATGTAGCAGTCTC--GGC 18702 Query 323 GGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGC------------ 370 |||||||||| | | || || || | ||||||||| ||| Sbjct 18703 TGTGTTATAGCTTTCTGCTGGATACGTCCTGGG-GGACTGAGGAACGCAGCGTGCCGTAT 18761 Query 371 -------GCTCCGGC----------TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTC 413 ||| |||| ||||||||||| | ||||| | ||| || |||||| Sbjct 18762 GGCGAGGGCTTCGGCCTTTCACGCTTAGGATGCTGGTGGAATGGCTTTAAACGACCCGTC 18821 Query 414 TTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCG 473 ||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| | Sbjct 18822 TTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTTGGGTGTCAAACCCGGATG 18881 Query 474 CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATG 533 ||||||||||||||| ||||||||||| | | | ||||||||||||||||| ||| Sbjct 18882 CGTAATGAAAGTGAATGGAGGTGGGAAGCGC--AAGCTGCACCATCGACCGATCTGGATT 18939 Query 534 TCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGC 593 | | |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 18940 TTCTAAGATGGATTTGAGTAAGAGCACGTATGTTGGGACCCGAAAGATGGTGAACTATGC 18999 Query 594 CTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAA 653 |||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 19000 CTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAA 19059 Query 654 ATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||||||||||||||||||||||| Sbjct 19060 ATCGATCGTCAAATTTGGGTATAGGGGCGA 19089 Score = 544 bits (602), Expect = 3e-152 Identities = 537/692 (78%), Gaps = 63/692 (9%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||| | | ||||||||||||||||||||||||||||||||| || |||| ||||||| Sbjct 8853 TGTGATACACTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAATTGGGTGGTAAAT 8912 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | | ||||||||||||||||||| |||||||||||||| ||||||| |||| |||||| Sbjct 8913 TCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGA 8972 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 ||||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||| Sbjct 8973 TGAAAAGCACTTTGGAAAGAGAGTTAAAA-GTACGTGAAATTGTTGGAAGGGAAACGCTT 9031 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGT 262 | | ||||||||| |||| ||| | ||| | || ||| Sbjct 9032 GAAGTCAGACTTGC------TTGC-------------CGGGCT-TGCTCGGTT-TGC--- 9067 Query 263 CAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGG 322 ||||||||||||| | || ||||||| ||| |||||| || || || Sbjct 9068 -AGGCCAGCATCAGTTTTCCGGGGCGGATAATGGCAGTTAGAATGTAGCAGTCTC--GGC 9124 Query 323 GGTGTTATAGC-----------------CCGGGGT-----GGAATGCGGCCCGCC---TG 357 |||||||||| | |||| |||| || || ||| || Sbjct 9125 TGTGTTATAGCTTTCTGCTGGATACGTCCTGGGGGACTGAGGAACGCAGCGTGCCGTATG 9184 Query 358 GACTGAGGTCCGCGCTCCG-----GCT-AGGATGCTGGCGTAATGGTTGTAAGCGGCCCG 411 | |||| | || ||| ||| |||||||||| | ||||| | ||| || |||| Sbjct 9185 GC--GAGGGCTTCGGTCCTTTCACGCTTAGGATGCTGGTGGAATGGCTTTAAACGACCCG 9242 Query 412 TCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTG 471 ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 9243 TCTTGAAACACGGACCAAGGAGTCTAACATGCTTGCGAGTATTTGGGTGTCAAACCCGGA 9302 Query 472 CGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGA 531 |||||||||||||||| ||||||||||| | | | ||||||||||||||||| || Sbjct 9303 TGCGTAATGAAAGTGAATGGAGGTGGGAAGCGC--AAGCTGCACCATCGACCGATCTGGA 9360 Query 532 TGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTAT 591 | | | |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 9361 TTTTCTAAGATGGATTTGAGTAAGAGCACGTATGTTGGGACCCGAAAGATGGTGAACTAT 9420 Query 592 GCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGC 651 |||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 9421 GCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGC 9480 Query 652 AAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||||||||||||||||||||||||| Sbjct 9481 AAATCGATCGTCAAATTTGGGTATAGGGGCGA 9512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079992170750