Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq74 228 6e-55 seq21 113 4e-20 seq31 98.7 8e-16 seq94 95.1 1e-14 >seq74 Length=129003 Score = 228 bits (252), Expect = 6e-55 Identities = 387/559 (69%), Gaps = 4/559 (1%) Strand=Plus/Minus Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 ||| || || | ||| || ||||| ||| || || || || ||||| ||||| |||| Sbjct 35633 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAA 35574 Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432 | ||||| || || |||||| ||||||| || ||||| | |||||||||||| || Sbjct 35573 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 35514 Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492 ||||||||| ||||| || || |||||||||||||||| |||| || ||| ||| || Sbjct 35513 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCC 35454 Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552 |||||||||||||| || |||||| | || || | ||| || | || ||||| || Sbjct 35453 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 35394 Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACC 66612 | ||| || |||||| ||||| || || || || || | ||| | || || Sbjct 35393 GTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGCC 35334 Query 66613 AATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAATATGCCG 66670 || || || |||||||| |||||| ||| | || | | || | | ||||| Sbjct 35333 GATGCCGCCTGCCGTCTTGGAGATG--AGCGCGCACGTCTTGAGCGTGTCGTAGATGCCC 35276 Query 66671 TCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTG 66730 || || ||||| |||| || || | |||| |||| || || || || | || ||| Sbjct 35275 TCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCGTG 35216 Query 66731 GCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTAC 66790 |||| |||||| || || | |||||||||||||| | |||||| |||||| Sbjct 35215 CCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTAC 35156 Query 66791 GTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGG 66850 |||||||| | ||||||| ||||| || || |||| || ||||| || | | Sbjct 35155 GTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAGCATG 35096 Query 66851 TATTGAGGCCGTTCGACCA 66869 | || || || ||| ||| Sbjct 35095 TGCTGCGGTCGCTCGGCCA 35077 >seq21 Length=367166 Score = 113 bits (124), Expect = 4e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 || |||||||| ||||| || || || || || || || |||||||| |||||| Sbjct 352020 CGCGAGGCGGTCGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATC 351961 Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821 |||||||| | | || |||| ||||| || || |||||||||||||| || | ||| Sbjct 351960 GGCATGAACAGCGACCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTC 351901 Query 61822 G-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGAT 61880 | | |||| | | || |||||| | | | | ||||| || || |||||||| ||||| Sbjct 351900 GCACTTGGCAACG-AGAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGAT 351842 Query 61881 TTCGCTGGATGGCAAGACGAA 61901 ||| |||| |||||||| || Sbjct 351841 CTCGATGGAGGGCAAGACCAA 351821 >seq31 Length=506143 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || ||||| |||||||||||||| |||||||| ||||| || |||| | ||| || | Sbjct 247519 GCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACTTGGTGGAGAGGTTCTCGGCG 247460 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316 |||||||| | | |||||||| ||||||||||| |||||||| Sbjct 247459 GAGGTGCAGATTGCCGAGGCGCGCTGTTTCTACGGTTTCCAGAT 247416 Score = 86.0 bits (94), Expect = 5e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 61717 ATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776 ||||| |||||||| ||||| ||||| ||||||||| | ||||||||||| Sbjct 246843 ATCGAGCAGGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCATGAACGCGACC 246784 Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAA 61835 || ||| ||||| || || || || || ||||| || | |||| ||||| | | | Sbjct 246783 CTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCTTGGGAACG-A 246725 Query 61836 GCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAA 61895 | | | || ||| | | ||||| || || || ||||| ||||| ||| |||| ||||| Sbjct 246724 GAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGATGGAGGGCAA 246665 Query 61896 GACGAA 61901 ||| || Sbjct 246664 GACCAA 246659 >seq94 Length=311871 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 61700 TTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCA 61759 |||| |||||||| ||||| ||||| || || || || || |||||||| || | Sbjct 54441 TTCGCGAGGCGGTCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTA 54382 Query 61760 TCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGG 61819 |||||||||| | | || |||| ||||| || || || || || ||||| || | Sbjct 54381 TCGGCATGAACAGCGACCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTA 54322 Query 61820 TCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGA 61879 ||| | || | || |||||| | | | | ||||| || || || |||||||||| Sbjct 54321 TCGCACTCGGCAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGA 54262 Query 61880 TTTCGCTGGATGGCAAGACGAA 61901 | ||| |||| |||||||| || Sbjct 54261 TCTCGATGGAGGGCAAGACCAA 54240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566231443600