Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq74 228 6e-55
seq21 113 4e-20
seq31 98.7 8e-16
seq94 95.1 1e-14
>seq74
Length=129003
Score = 228 bits (252), Expect = 6e-55
Identities = 387/559 (69%), Gaps = 4/559 (1%)
Strand=Plus/Minus
Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372
||| || || | ||| || ||||| ||| || || || || ||||| ||||| ||||
Sbjct 35633 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAA 35574
Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432
| ||||| || || |||||| ||||||| || ||||| | |||||||||||| ||
Sbjct 35573 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 35514
Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492
||||||||| ||||| || || |||||||||||||||| |||| || ||| ||| ||
Sbjct 35513 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCC 35454
Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552
|||||||||||||| || |||||| | || || | ||| || | || ||||| ||
Sbjct 35453 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 35394
Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACC 66612
| ||| || |||||| ||||| || || || || || | ||| | || ||
Sbjct 35393 GTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGCC 35334
Query 66613 AATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAATATGCCG 66670
|| || || |||||||| |||||| ||| | || | | || | | |||||
Sbjct 35333 GATGCCGCCTGCCGTCTTGGAGATG--AGCGCGCACGTCTTGAGCGTGTCGTAGATGCCC 35276
Query 66671 TCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTG 66730
|| || ||||| |||| || || | |||| |||| || || || || | || |||
Sbjct 35275 TCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCGTG 35216
Query 66731 GCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTAC 66790
|||| |||||| || || | |||||||||||||| | |||||| ||||||
Sbjct 35215 CCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTAC 35156
Query 66791 GTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGG 66850
|||||||| | ||||||| ||||| || || |||| || ||||| || | |
Sbjct 35155 GTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAGCATG 35096
Query 66851 TATTGAGGCCGTTCGACCA 66869
| || || || ||| |||
Sbjct 35095 TGCTGCGGTCGCTCGGCCA 35077
>seq21
Length=367166
Score = 113 bits (124), Expect = 4e-20
Identities = 147/201 (73%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761
|| |||||||| ||||| || || || || || || || |||||||| ||||||
Sbjct 352020 CGCGAGGCGGTCGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATC 351961
Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821
|||||||| | | || |||| ||||| || || |||||||||||||| || | |||
Sbjct 351960 GGCATGAACAGCGACCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTC 351901
Query 61822 G-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGAT 61880
| | |||| | | || |||||| | | | | ||||| || || |||||||| |||||
Sbjct 351900 GCACTTGGCAACG-AGAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGAT 351842
Query 61881 TTCGCTGGATGGCAAGACGAA 61901
||| |||| |||||||| ||
Sbjct 351841 CTCGATGGAGGGCAAGACCAA 351821
>seq31
Length=506143
Score = 98.7 bits (108), Expect = 8e-16
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272
|| ||||| |||||||||||||| |||||||| ||||| || |||| | ||| || |
Sbjct 247519 GCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACTTGGTGGAGAGGTTCTCGGCG 247460
Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316
|||||||| | | |||||||| ||||||||||| ||||||||
Sbjct 247459 GAGGTGCAGATTGCCGAGGCGCGCTGTTTCTACGGTTTCCAGAT 247416
Score = 86.0 bits (94), Expect = 5e-12
Identities = 132/186 (71%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 61717 ATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776
||||| |||||||| ||||| ||||| ||||||||| | |||||||||||
Sbjct 246843 ATCGAGCAGGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCATGAACGCGACC 246784
Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAA 61835
|| ||| ||||| || || || || || ||||| || | |||| ||||| | | |
Sbjct 246783 CTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCTTGGGAACG-A 246725
Query 61836 GCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAA 61895
| | | || ||| | | ||||| || || || ||||| ||||| ||| |||| |||||
Sbjct 246724 GAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGATGGAGGGCAA 246665
Query 61896 GACGAA 61901
||| ||
Sbjct 246664 GACCAA 246659
>seq94
Length=311871
Score = 95.1 bits (104), Expect = 1e-14
Identities = 142/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 61700 TTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCA 61759
|||| |||||||| ||||| ||||| || || || || || |||||||| || |
Sbjct 54441 TTCGCGAGGCGGTCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTA 54382
Query 61760 TCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGG 61819
|||||||||| | | || |||| ||||| || || || || || ||||| || |
Sbjct 54381 TCGGCATGAACAGCGACCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTA 54322
Query 61820 TCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGA 61879
||| | || | || |||||| | | | | ||||| || || || ||||||||||
Sbjct 54321 TCGCACTCGGCAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGA 54262
Query 61880 TTTCGCTGGATGGCAAGACGAA 61901
| ||| |||| |||||||| ||
Sbjct 54261 TCTCGATGGAGGGCAAGACCAA 54240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397566231443600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |