Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq123 113 2e-19
seq122 91.5 6e-13
seq228 87.8 7e-12
seq281 86.0 3e-11
seq27 86.0 3e-11
>seq123
Length=412796
Score = 113 bits (124), Expect = 2e-19
Identities = 265/394 (67%), Gaps = 16/394 (4%)
Strand=Plus/Minus
Query 88929 ACCTTCATCATGGCCGATGCCGAGAGCCGCGG--ACGGGCCGTGGCGCGCAAGTTCACCG 88986
|||||||||||| ||| ||| |||| | || | | ||| |||||| ||| ||
Sbjct 309798 ACCTTCATCATGCCCG--GCCAGGAGCTGAGGCGAAAGAACGTCCGCCGCAAGCTCAACG 309741
Query 88987 CCGTGGGCCGAGAGTGCAGGGACAAGGCCGTGGTCGTGGTGGACGACTCTGTCGTGCGCG 89046
| ||| || |||| | | |||| ||| | | || |||||||| | |||||||
Sbjct 309740 CGATGGCCCTCGAGTTCGCCGGCAAGAACGTCATGATCGTCGACGACTCGATTGTGCGCG 309681
Query 89047 GCACCACATCCAAGTTCATAATCGACCTCCTTCGCAAGTCTGGCGCCACCAAGGTCTACC 89106
| || || || ||| || |||| | | ||| || | ||||||| |||||| |
Sbjct 309680 GGACAACCTCGAAGGAGATTATCGTCATGGCGCGCGAGGCGGGCGCCAAGAAGGTCATCA 309621
Query 89107 TCGCTTCTTGCTCTCCCCCGATCCGTTACCCCAACGTGTACGGCATCGACATACC--GTC 89164
| ||||||||| |||| || ||||| ||||| |||||||||||| || || || |||
Sbjct 309620 TGGCTTCTTGCGCTCCTCCCATCCGCTACCCTTGCGTGTACGGCATTGATATGCCGAGTC 309561
Query 89165 GGCCAAGGAGCTCATTGCTTCTGGTCGCACCGAGCACGAGGTGGCTCTCCTCCTCGGAGC 89224
| | | |||||| | || | ||||| ||| |||| | || | |||| ||
Sbjct 309560 G--CCATGAGCTCGTCGCACACGACCGCACGGAGGACGAAATCGCCGAGTACATCGGCGC 309503
Query 89225 CGACCAGGTCATCTATCAGAGTGTCGACGAC----TTGCAAGCGGCCTGTCGCCAGTTCA 89280
|||||| |||||| |||| |||||||| | | ||| ||| | |||| |||
Sbjct 309502 CGACCACATCATCTTCCAGACACTCGACGACCTCGTCTCCAGCTGCCAG-CGCC---TCA 309447
Query 89281 ATCCCTCCATCACGGCCTTTGAGGCCTCTGTCTT 89314
| ||||||||| | ||| ||| ||| |||||
Sbjct 309446 ACCCCTCCATCGAGCGCTTCGAGTGCTCCGTCTT 309413
>seq122
Length=66379
Score = 91.5 bits (100), Expect = 6e-13
Identities = 111/151 (74%), Gaps = 3/151 (2%)
Strand=Plus/Minus
Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161
||||||| |||||||||||||||||||| ||| |||||| || |||||| || || ||
Sbjct 3651 TCTCGTCGCCGTCAAAGTCGGCGTTGTACGGCGAGGTGACAGAGAGGTTGAGGCGGAAGG 3592
Query 351162 TGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGG 351221
| || ||| || || | ||||||||| |||| || ||| ||||| | || |
Sbjct 3591 TCGAG---TACGGCATGAGCTTGACGCGGTGCGCCATCATCGACATCTTGTGCAACGACG 3535
Query 351222 GCTGGCGATTGTGGATGATGATGTCGCCATC 351252
|||| || ||| | || ||||||||| ||
Sbjct 3534 GCTGCCGGTTGAACAGGACGATGTCGCCGTC 3504
Score = 91.5 bits (100), Expect = 6e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 349032 CGAGGTAGACCGACGCATTGGGCTTCTTCATCTTGGGCGTGGCGTCGAGAATCTCCTTGA 349091
|||||||||| | || ||| |||| | ||| | | ||| || ||||||||||
Sbjct 5611 CGAGGTAGACGGTCGTCGACGGCGTCTTGAGGTTGACGGCGACGTTGATGATCTCCTTGA 5552
Query 349092 GTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGA 349151
| | || | || || || |||||||| | || ||| ||||| | |||||||| | ||
Sbjct 5551 GACGCGGGACACCGAGCGTGACGTTCTTCGACGAGACACCGGCGTAATGGAAGGTGTTGA 5492
Query 349152 GGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGC 349211
| |||| |||||| ||||| ||||| |||| | ||||| |||| ||||||||
Sbjct 5491 GCGTCATCTGCGTCGCCGGCTCACCGATCGACTGCGCGGCGAGCGTGCCGCACATCTCGC 5432
Query 349212 CGGGCGCG 349219
| ||||||
Sbjct 5431 CCGGCGCG 5424
>seq228
Length=152450
Score = 87.8 bits (96), Expect = 7e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 349032 CGAGGTAGACCGACGCATTGGGCTTCTTCATCTTGGGCGTGGCGTCGAGAATCTCCTTGA 349091
|||||||||| | || ||| |||| | ||| | | ||| || ||||||||||
Sbjct 61158 CGAGGTAGACGGTCGTCGACGGCGTCTTGAGGTTGACGGCGACGTTGATGATCTCCTTGA 61099
Query 349092 GTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGA 349151
| | || | || || || |||||||| | || || ||||| ||||||| || | ||
Sbjct 61098 GACGCGGTACACCGAGCGTGACGTTCTTTGACGACACACCGGCGTAGTGGAACGTGTTGA 61039
Query 349152 GGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGC 349211
| |||| |||||| ||||| || || |||| ||||||| |||| ||||||||
Sbjct 61038 GCGTCATCTGCGTCGCCGGCTCACCAATCGACTGCGCCGCGAGCGTGCCGCACATCTCGC 60979
Query 349212 CGGGCGCG 349219
| ||||||
Sbjct 60978 CCGGCGCG 60971
>seq281
Length=202609
Score = 86.0 bits (94), Expect = 3e-11
Identities = 115/159 (72%), Gaps = 6/159 (4%)
Strand=Plus/Minus
Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046
||||| |||||| || |||||||| || || ||||||||||||| ||||||| |||
Sbjct 20973 CTCGACGAACATGCCGATTGTCATGCGGGAGGGAAAGGCATGCGGGTTGATGATGACGTC 20914
Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGT---CCTCGGGGTTGACCACCAGGCCGTT 449103
|||| | ||| | | || |||||||||||| || | |||| | | | |
Sbjct 20913 GGGCTGCATGCCAGACTCGGTGAAGGGCATGTCGACCGCCGGGT---ACTTCTGCGAGCA 20857
Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCC 449142
||| ||||||||||||||||| |||||||||| ||
Sbjct 20856 GACACCCTTCTGGCCGTGGCGAGACGAGAACTTGTCGCC 20818
>seq27
Length=19384
Score = 86.0 bits (94), Expect = 3e-11
Identities = 118/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046
|||||||| | || || ||||||||||| ||| | | |||||||||||||| | |||
Sbjct 19268 CTCGAGCATCTTGCCGACCGTCATGCGCGAGGGGAAACCGTGCGGGTTCATGATCACGTC 19209
Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGAC 449106
||| ||| ||||||| ||||||||||| | ||| | || ||| |||
Sbjct 19208 GGGGCAGATGCCCTGGTCGTTGAACGGCATGTCCTCCTGCGGGACGATGAGACCGCAGAC 19149
Query 449107 GCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGG 449151
|||||||| |||||||| |||||||||| || |||| ||
Sbjct 19148 ACCCTTCTGACCGTGGCGAGACGAGAACTTGTCTCCGAGCTCAGG 19104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2084729212796270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |