Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq123 113 2e-19 seq122 91.5 6e-13 seq228 87.8 7e-12 seq281 86.0 3e-11 seq27 86.0 3e-11 >seq123 Length=412796 Score = 113 bits (124), Expect = 2e-19 Identities = 265/394 (67%), Gaps = 16/394 (4%) Strand=Plus/Minus Query 88929 ACCTTCATCATGGCCGATGCCGAGAGCCGCGG--ACGGGCCGTGGCGCGCAAGTTCACCG 88986 |||||||||||| ||| ||| |||| | || | | ||| |||||| ||| || Sbjct 309798 ACCTTCATCATGCCCG--GCCAGGAGCTGAGGCGAAAGAACGTCCGCCGCAAGCTCAACG 309741 Query 88987 CCGTGGGCCGAGAGTGCAGGGACAAGGCCGTGGTCGTGGTGGACGACTCTGTCGTGCGCG 89046 | ||| || |||| | | |||| ||| | | || |||||||| | ||||||| Sbjct 309740 CGATGGCCCTCGAGTTCGCCGGCAAGAACGTCATGATCGTCGACGACTCGATTGTGCGCG 309681 Query 89047 GCACCACATCCAAGTTCATAATCGACCTCCTTCGCAAGTCTGGCGCCACCAAGGTCTACC 89106 | || || || ||| || |||| | | ||| || | ||||||| |||||| | Sbjct 309680 GGACAACCTCGAAGGAGATTATCGTCATGGCGCGCGAGGCGGGCGCCAAGAAGGTCATCA 309621 Query 89107 TCGCTTCTTGCTCTCCCCCGATCCGTTACCCCAACGTGTACGGCATCGACATACC--GTC 89164 | ||||||||| |||| || ||||| ||||| |||||||||||| || || || ||| Sbjct 309620 TGGCTTCTTGCGCTCCTCCCATCCGCTACCCTTGCGTGTACGGCATTGATATGCCGAGTC 309561 Query 89165 GGCCAAGGAGCTCATTGCTTCTGGTCGCACCGAGCACGAGGTGGCTCTCCTCCTCGGAGC 89224 | | | |||||| | || | ||||| ||| |||| | || | |||| || Sbjct 309560 G--CCATGAGCTCGTCGCACACGACCGCACGGAGGACGAAATCGCCGAGTACATCGGCGC 309503 Query 89225 CGACCAGGTCATCTATCAGAGTGTCGACGAC----TTGCAAGCGGCCTGTCGCCAGTTCA 89280 |||||| |||||| |||| |||||||| | | ||| ||| | |||| ||| Sbjct 309502 CGACCACATCATCTTCCAGACACTCGACGACCTCGTCTCCAGCTGCCAG-CGCC---TCA 309447 Query 89281 ATCCCTCCATCACGGCCTTTGAGGCCTCTGTCTT 89314 | ||||||||| | ||| ||| ||| ||||| Sbjct 309446 ACCCCTCCATCGAGCGCTTCGAGTGCTCCGTCTT 309413 >seq122 Length=66379 Score = 91.5 bits (100), Expect = 6e-13 Identities = 111/151 (74%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161 ||||||| |||||||||||||||||||| ||| |||||| || |||||| || || || Sbjct 3651 TCTCGTCGCCGTCAAAGTCGGCGTTGTACGGCGAGGTGACAGAGAGGTTGAGGCGGAAGG 3592 Query 351162 TGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGG 351221 | || ||| || || | ||||||||| |||| || ||| ||||| | || | Sbjct 3591 TCGAG---TACGGCATGAGCTTGACGCGGTGCGCCATCATCGACATCTTGTGCAACGACG 3535 Query 351222 GCTGGCGATTGTGGATGATGATGTCGCCATC 351252 |||| || ||| | || ||||||||| || Sbjct 3534 GCTGCCGGTTGAACAGGACGATGTCGCCGTC 3504 Score = 91.5 bits (100), Expect = 6e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 349032 CGAGGTAGACCGACGCATTGGGCTTCTTCATCTTGGGCGTGGCGTCGAGAATCTCCTTGA 349091 |||||||||| | || ||| |||| | ||| | | ||| || |||||||||| Sbjct 5611 CGAGGTAGACGGTCGTCGACGGCGTCTTGAGGTTGACGGCGACGTTGATGATCTCCTTGA 5552 Query 349092 GTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGA 349151 | | || | || || || |||||||| | || ||| ||||| | |||||||| | || Sbjct 5551 GACGCGGGACACCGAGCGTGACGTTCTTCGACGAGACACCGGCGTAATGGAAGGTGTTGA 5492 Query 349152 GGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGC 349211 | |||| |||||| ||||| ||||| |||| | ||||| |||| |||||||| Sbjct 5491 GCGTCATCTGCGTCGCCGGCTCACCGATCGACTGCGCGGCGAGCGTGCCGCACATCTCGC 5432 Query 349212 CGGGCGCG 349219 | |||||| Sbjct 5431 CCGGCGCG 5424 >seq228 Length=152450 Score = 87.8 bits (96), Expect = 7e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 349032 CGAGGTAGACCGACGCATTGGGCTTCTTCATCTTGGGCGTGGCGTCGAGAATCTCCTTGA 349091 |||||||||| | || ||| |||| | ||| | | ||| || |||||||||| Sbjct 61158 CGAGGTAGACGGTCGTCGACGGCGTCTTGAGGTTGACGGCGACGTTGATGATCTCCTTGA 61099 Query 349092 GTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGA 349151 | | || | || || || |||||||| | || || ||||| ||||||| || | || Sbjct 61098 GACGCGGTACACCGAGCGTGACGTTCTTTGACGACACACCGGCGTAGTGGAACGTGTTGA 61039 Query 349152 GGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGC 349211 | |||| |||||| ||||| || || |||| ||||||| |||| |||||||| Sbjct 61038 GCGTCATCTGCGTCGCCGGCTCACCAATCGACTGCGCCGCGAGCGTGCCGCACATCTCGC 60979 Query 349212 CGGGCGCG 349219 | |||||| Sbjct 60978 CCGGCGCG 60971 >seq281 Length=202609 Score = 86.0 bits (94), Expect = 3e-11 Identities = 115/159 (72%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| |||||| || |||||||| || || ||||||||||||| ||||||| ||| Sbjct 20973 CTCGACGAACATGCCGATTGTCATGCGGGAGGGAAAGGCATGCGGGTTGATGATGACGTC 20914 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGT---CCTCGGGGTTGACCACCAGGCCGTT 449103 |||| | ||| | | || |||||||||||| || | |||| | | | | Sbjct 20913 GGGCTGCATGCCAGACTCGGTGAAGGGCATGTCGACCGCCGGGT---ACTTCTGCGAGCA 20857 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCC 449142 ||| ||||||||||||||||| |||||||||| || Sbjct 20856 GACACCCTTCTGGCCGTGGCGAGACGAGAACTTGTCGCC 20818 >seq27 Length=19384 Score = 86.0 bits (94), Expect = 3e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 |||||||| | || || ||||||||||| ||| | | |||||||||||||| | ||| Sbjct 19268 CTCGAGCATCTTGCCGACCGTCATGCGCGAGGGGAAACCGTGCGGGTTCATGATCACGTC 19209 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGAC 449106 ||| ||| ||||||| ||||||||||| | ||| | || ||| ||| Sbjct 19208 GGGGCAGATGCCCTGGTCGTTGAACGGCATGTCCTCCTGCGGGACGATGAGACCGCAGAC 19149 Query 449107 GCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGG 449151 |||||||| |||||||| |||||||||| || |||| || Sbjct 19148 ACCCTTCTGACCGTGGCGAGACGAGAACTTGTCTCCGAGCTCAGG 19104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084729212796270