Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01-
27] 137 sequences; 21,492,894 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq116 91.5 6e-13
seq1 86.0 3e-11
seq47 84.2 9e-11
>seq116
Length=981576
Score = 91.5 bits (100), Expect = 6e-13
Identities = 111/151 (74%), Gaps = 3/151 (2%)
Strand=Plus/Minus
Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161
||||||| |||||||||||||||||||| ||| |||||| || |||||| || || ||
Sbjct 724740 TCTCGTCGCCGTCAAAGTCGGCGTTGTACGGCGAGGTGACAGAGAGGTTGAGGCGGAAGG 724681
Query 351162 TGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGG 351221
| || ||| || || | ||||||||| |||| || ||| ||||| | || |
Sbjct 724680 TCGAG---TACGGCATGAGCTTGACGCGGTGCGCCATCATCGACATCTTGTGCAACGACG 724624
Query 351222 GCTGGCGATTGTGGATGATGATGTCGCCATC 351252
|||| || ||| | || ||||||||| ||
Sbjct 724623 GCTGCCGGTTGAACAGGACGATGTCGCCGTC 724593
Score = 91.5 bits (100), Expect = 6e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 349032 CGAGGTAGACCGACGCATTGGGCTTCTTCATCTTGGGCGTGGCGTCGAGAATCTCCTTGA 349091
|||||||||| | || ||| |||| | ||| | | ||| || ||||||||||
Sbjct 726700 CGAGGTAGACGGTCGTCGACGGCGTCTTGAGGTTGACGGCGACGTTGATGATCTCCTTGA 726641
Query 349092 GTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGA 349151
| | || | || || || |||||||| | || ||| ||||| | |||||||| | ||
Sbjct 726640 GACGCGGGACACCGAGCGTGACGTTCTTCGACGAGACACCGGCGTAATGGAAGGTGTTGA 726581
Query 349152 GGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGC 349211
| |||| |||||| ||||| ||||| |||| | ||||| |||| ||||||||
Sbjct 726580 GCGTCATCTGCGTCGCCGGCTCACCGATCGACTGCGCGGCGAGCGTGCCGCACATCTCGC 726521
Query 349212 CGGGCGCG 349219
| ||||||
Sbjct 726520 CCGGCGCG 726513
>seq1
Length=2201887
Score = 86.0 bits (94), Expect = 3e-11
Identities = 115/159 (72%), Gaps = 6/159 (4%)
Strand=Plus/Plus
Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046
||||| |||||| || |||||||| || || ||||||||||||| ||||||| |||
Sbjct 471554 CTCGACGAACATGCCGATTGTCATGCGGGAGGGAAAGGCATGCGGGTTGATGATGACGTC 471613
Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGT---CCTCGGGGTTGACCACCAGGCCGTT 449103
|||| | ||| | | || |||||||||||| || | |||| | | | |
Sbjct 471614 GGGCTGCATGCCAGACTCGGTGAAGGGCATGTCGACCGCCGGGT---ACTTCTGCGAGCA 471670
Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCC 449142
||| ||||||||||||||||| |||||||||| ||
Sbjct 471671 GACACCCTTCTGGCCGTGGCGAGACGAGAACTTGTCGCC 471709
>seq47
Length=435211
Score = 84.2 bits (92), Expect = 9e-11
Identities = 121/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 448981 GAGGGCCTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGAT 449040
|||| |||||||| | || || |||||||| || ||| | | ||||||||||||||
Sbjct 111211 GAGGAGCTCGAGCATCTTGCCGACCGTCATGCGGGAGGGGAAACCGTGCGGGTTCATGAT 111270
Query 449041 GATGTCGGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCC 449100
| |||||| ||| ||||||| ||||||||||| | ||| | || ||
Sbjct 111271 CACGTCGGGGCAGATGCCCTGGTCGTTGAACGGCATGTCCTCCTGCGGGACGATGAGACC 111330
Query 449101 GTTGACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGG 449151
| ||| |||||||| |||||||| |||||||||| || | |||||
Sbjct 111331 GCAGACACCCTTCTGACCGTGGCGAGACGAGAACTTGTCGCCGAGTTCGGG 111381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2084735451378326
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |