Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01- 27] 137 sequences; 21,492,894 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq116 91.5 6e-13 seq1 86.0 3e-11 seq47 84.2 9e-11 >seq116 Length=981576 Score = 91.5 bits (100), Expect = 6e-13 Identities = 111/151 (74%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161 ||||||| |||||||||||||||||||| ||| |||||| || |||||| || || || Sbjct 724740 TCTCGTCGCCGTCAAAGTCGGCGTTGTACGGCGAGGTGACAGAGAGGTTGAGGCGGAAGG 724681 Query 351162 TGTAGCCCCGCGGGTTGCGCCTCACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGG 351221 | || ||| || || | ||||||||| |||| || ||| ||||| | || | Sbjct 724680 TCGAG---TACGGCATGAGCTTGACGCGGTGCGCCATCATCGACATCTTGTGCAACGACG 724624 Query 351222 GCTGGCGATTGTGGATGATGATGTCGCCATC 351252 |||| || ||| | || ||||||||| || Sbjct 724623 GCTGCCGGTTGAACAGGACGATGTCGCCGTC 724593 Score = 91.5 bits (100), Expect = 6e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 349032 CGAGGTAGACCGACGCATTGGGCTTCTTCATCTTGGGCGTGGCGTCGAGAATCTCCTTGA 349091 |||||||||| | || ||| |||| | ||| | | ||| || |||||||||| Sbjct 726700 CGAGGTAGACGGTCGTCGACGGCGTCTTGAGGTTGACGGCGACGTTGATGATCTCCTTGA 726641 Query 349092 GTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGA 349151 | | || | || || || |||||||| | || ||| ||||| | |||||||| | || Sbjct 726640 GACGCGGGACACCGAGCGTGACGTTCTTCGACGAGACACCGGCGTAATGGAAGGTGTTGA 726581 Query 349152 GGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGC 349211 | |||| |||||| ||||| ||||| |||| | ||||| |||| |||||||| Sbjct 726580 GCGTCATCTGCGTCGCCGGCTCACCGATCGACTGCGCGGCGAGCGTGCCGCACATCTCGC 726521 Query 349212 CGGGCGCG 349219 | |||||| Sbjct 726520 CCGGCGCG 726513 >seq1 Length=2201887 Score = 86.0 bits (94), Expect = 3e-11 Identities = 115/159 (72%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| |||||| || |||||||| || || ||||||||||||| ||||||| ||| Sbjct 471554 CTCGACGAACATGCCGATTGTCATGCGGGAGGGAAAGGCATGCGGGTTGATGATGACGTC 471613 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGT---CCTCGGGGTTGACCACCAGGCCGTT 449103 |||| | ||| | | || |||||||||||| || | |||| | | | | Sbjct 471614 GGGCTGCATGCCAGACTCGGTGAAGGGCATGTCGACCGCCGGGT---ACTTCTGCGAGCA 471670 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCC 449142 ||| ||||||||||||||||| |||||||||| || Sbjct 471671 GACACCCTTCTGGCCGTGGCGAGACGAGAACTTGTCGCC 471709 >seq47 Length=435211 Score = 84.2 bits (92), Expect = 9e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 448981 GAGGGCCTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGAT 449040 |||| |||||||| | || || |||||||| || ||| | | |||||||||||||| Sbjct 111211 GAGGAGCTCGAGCATCTTGCCGACCGTCATGCGGGAGGGGAAACCGTGCGGGTTCATGAT 111270 Query 449041 GATGTCGGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCC 449100 | |||||| ||| ||||||| ||||||||||| | ||| | || || Sbjct 111271 CACGTCGGGGCAGATGCCCTGGTCGTTGAACGGCATGTCCTCCTGCGGGACGATGAGACC 111330 Query 449101 GTTGACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGG 449151 | ||| |||||||| |||||||| |||||||||| || | ||||| Sbjct 111331 GCAGACACCCTTCTGACCGTGGCGAGACGAGAACTTGTCGCCGAGTTCGGG 111381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084735451378326